Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2952 ATGCAGTCGCACCTTCTGACGGGACCCATCTGCGGTCGCGCTACGGCGTTGCCCTCCGTCGCGGACGCATCTCCCTTCTTCTCTGCCACTCCTCCCATCTCCATCCGCCGGCGTCTCCGCTCGTGGTGCCCATTCATAGCCGCATCATCGTCATCGTCTTCCTCCTCTTCGTCGTCGGCAGCAGCCACTGGTAGTCAGAGCTTATACGCGGTGCTCGGCGTCCCAATCACCGCCACTGCCGCTGAGATCAAACGCGCTTACCGGCTCCTGGCCCGCAAGTATCACCCTGATGTTAGCAAAGATTTACAAGCAGCTGAATTGTTCAAGAGCATCCGTCATGCATATGAAGTACTATCGAATGAAGTAACAAGAATTCAGTATGATAGAGAACTTCAGTACAGTCACAAGCCTTACAGAGATAAATGGAGTCACAGCACTGAGTTTGAAGACCAAGCAAGAATCTATAGGTGGGCCAACCTGAGGAGGAAAATGTATAATGAAAGATACACAGAGCATTACACTGTCGATGAGGGTTACTATACCACTGAAACAGATGAGGAGGAAGATGAAGGAGACTTAGACGAAGAGAGGGGCTCCTTTATTGAAGTGCTTAGATCAGCATTCGTGATTATATTTTTGTTCCAGACGTTAGGGTCCCGCCTTTCTCTCACGTTTAGCAGTGTGATGGCATTGCTGGATGAGAAGTTAGATAATGGATATAAAATTGGTTATATAATAGCATGGATTATGGGCGGAAGGGGTGGCATATTGCTAACAATGTTCTTGTCATTTGCAAGTTGGGTTTGCGGGAAAACCAGTAGTAGTGCAGTGGTACTGGTGATAGTAGCCATGTGGGTCGGCTCCTACCTCTCAAGGTATGCTCCACTTCCTCAAGGTGCTCTGTTAACACTACTCTATATGTCCATTAAGCTGCAATCTGATCATATATAA 951 0.4805 MQSHLLTGPICGRATALPSVADASPFFSATPPISIRRRLRSWCPFIAASSSSSSSSSSSAAATGSQSLYAVLGVPITATAAEIKRAYRLLARKYHPDVSKDLQAAELFKSIRHAYEVLSNEVTRIQYDRELQYSHKPYRDKWSHSTEFEDQARIYRWANLRRKMYNERYTEHYTVDEGYYTTETDEEEDEGDLDEERGSFIEVLRSAFVIIFLFQTLGSRLSLTFSSVMALLDEKLDNGYKIGYIIAWIMGGRGGILLTMFLSFASWVCGKTSSSAVVLVIVAMWVGSYLSRYAPLPQGALLTLLYMSIKLQSDHI* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2952 316 CDD DnaJ 69 120 IPR001623 -
Amo16g2952 316 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 307 - -
Amo16g2952 316 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Amo16g2952 316 SMART dnaj_3 66 123 IPR001623 -
Amo16g2952 316 Gene3D DnaJ domain 64 175 IPR036869 -
Amo16g2952 316 PRINTS DnaJ domain signature 69 87 IPR001623 -
Amo16g2952 316 PRINTS DnaJ domain signature 87 102 IPR001623 -
Amo16g2952 316 PRINTS DnaJ domain signature 103 123 IPR001623 -
Amo16g2952 316 Pfam DnaJ domain 68 128 IPR001623 -
Amo16g2952 316 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Amo16g2952 316 SUPERFAMILY Chaperone J-domain 65 137 IPR036869 -
Amo16g2952 316 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 34 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2952 Amo-Chr16 128894037 128898202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2952 53 210 Miscellaneous Gene Families AT1G79030 30.978 4.40e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2952 - - adu:107494507 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2952 16 128894037 128898202 Amo16g2952 16 128894037 128898202 ECH
Amo16g2952 16 128894037 128898202 Amo06g2244 06 79930601 79935053 hybridization