Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2244 ATGCAGTCGCACCTTCTGACGGGACCCATCCGCGGTAGCGCTACGGCGTTTCCCTCCGTCGCGGACGCATCTCCCTTCTTCTCTGCCACTCCTCCCATCTCCATCCGCCGGCGTCTCCGCTCGTGCTGCCCATTCATAGCCGCATCATCGTCATCGTCTTCCTCCTCTTCGTCGTCGGCAGCAGCATTCAACGCCACTGGTAGTCAGAGCTTATACGCGGTGCTCGGCGTCCCTATCACCGCCACTGCCGCTGAGATCAAACGCGCTTACCGGCTCCTCGCCCGCAAGTATCACCCTGATGTTAGCAAAGATTTACAAGCAGCTGAATTGTTCAAGAGCATCCGTCATGCATATGAAGTACTATCGAATGAAGTAACAAGAATTCAGTATGATAGAGAACTTCAATACAGTCACAAGCCTTACAGAGAAAAATGGAGTCACAGCACTGAGTTTGAAGACCAAGCAAGAATCTATAGGTGGGCCAACCTGAGGAGGAAAATGTATAATGAAAGATACACAGAGCATTACAATGTCGATGAGGGTTACTATACCACTGAAACAGACGAGGAGGAAGATGAAGGAGACTTAGACGAAGAGAGGGGCTCCTTTATTGAAGTGCTTAGATCAGCATTCGTGATTATATTTTTGTTCCAGACGTTAGGGTCCCGCCTTTCTCTCACGTTTAGCAGTGTGATGGCATTGCTGGATGAGAAGTTAGATAATGGATATAAAATTGGTTATATAATAGCATGGATAATGGGCGGAAGGGGTGGCATATTGCTAACAATGTTCTTGTCATTTGCAAGTTGGGTTTGCGGGAAAACCAGTAGTAGTGCAGTGGTACTGGTGATTGTAGCCATGTGGGTCGGCTCCTACCTCTCAAGGTACGCTCCACTTCCTCAAGGTGCTCTGTTAACGCTACTCTATATGTCCATTAAGCTGCAATCTGATCATATATAA 960 0.4802 MQSHLLTGPIRGSATAFPSVADASPFFSATPPISIRRRLRSCCPFIAASSSSSSSSSSSAAAFNATGSQSLYAVLGVPITATAAEIKRAYRLLARKYHPDVSKDLQAAELFKSIRHAYEVLSNEVTRIQYDRELQYSHKPYREKWSHSTEFEDQARIYRWANLRRKMYNERYTEHYNVDEGYYTTETDEEEDEGDLDEERGSFIEVLRSAFVIIFLFQTLGSRLSLTFSSVMALLDEKLDNGYKIGYIIAWIMGGRGGILLTMFLSFASWVCGKTSSSAVVLVIVAMWVGSYLSRYAPLPQGALLTLLYMSIKLQSDHI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2244 319 PRINTS DnaJ domain signature 72 90 IPR001623 -
Amo06g2244 319 PRINTS DnaJ domain signature 90 105 IPR001623 -
Amo06g2244 319 PRINTS DnaJ domain signature 106 126 IPR001623 -
Amo06g2244 319 ProSiteProfiles dnaJ domain profile. 70 134 IPR001623 -
Amo06g2244 319 SUPERFAMILY Chaperone J-domain 66 139 IPR036869 -
Amo06g2244 319 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 43 310 - -
Amo06g2244 319 CDD DnaJ 72 123 IPR001623 -
Amo06g2244 319 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Amo06g2244 319 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 43 310 - -
Amo06g2244 319 SMART dnaj_3 69 126 IPR001623 -
Amo06g2244 319 Pfam DnaJ domain 71 131 IPR001623 -
Amo06g2244 319 Gene3D DnaJ domain 67 180 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2244 Amo-Chr6 79930601 79935053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2244 44 135 Miscellaneous Gene Families AT5G49580 33.684 3.12e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2244 - - adu:107494507 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2952 16 128894037 128898202 Amo06g2244 06 79930601 79935053 hybridization