Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2839 ATGAACGTCGACCGCTACCTAAAGGAGCTCTCCGGCTCTTCCCAGCGAATCCCGACGGAGCAGAGCTTCCACCATTTCTACCTCAACTTCGACGAATTCAAGCGCCCGATCGACGAAATCGCACGTCGCTCGCAGTCGATGCTGGAGAGCATCGGCGCCACCACGCATGCATGGAACACCGGCGTGGATTTCCCGTCCGACATCGACGATGCTTACGAGTGGGTGGTTGACATGAACGATGAGCTCTTGGAATGGTTTGACGAGTCAGTGAGCGAGGTTCGGAAGGCGAGGGAGGAGGACGAGGAGTTCGAGGAGGTGGAGCTGGAGAACGGGTTCGGGTTGGTTCGAGTCAAGAAGGAGGGACGTGGTGTTGGGAAGAAGGTGGAAGCGGCGGGGACTACGGAAACGACGAAGCCGAAGGTGTCGTTTCACTTAGCCACGGTTAGGAAGCCTCAGGATGTGTACGACATTGTCGTTAACAACACCAACGTGCCGTTTGAGCATATTTGGTTGGAGAAGAGTGAGGATGATCAGAGGTTCATTCATCCTTTGGAGAAACACTCTTATTTGGAGTTTGTTGATAAAAATCTTGAGGGTTTAGTGCCAATGAAGCCTCCTGCAATGGAATGCACTCCTTTCAAGCTAGTGGAGGACGTCAAAGGATTGAAGGAATTGGCTGCGAAGCTGCATGCTGCTGATGAATTTGCGGTGGATTTGGAACATAATCAATATCGTTCATTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAGGATTTTATTGTAGATACTTTAAAGCTCCGTGTCCATGTTGGGCCTTATCTGCGTGAAGTCTTTAAGGACCCTACAAAGAAGAAGGTCTTGCATGGAGCAGATCGAGATATTGTGTGGTTGCAACGGGATTTTGGAATATATGTTTGTAATATGTTTGACACGGGCCAGGCTTCTAGGGTGTTAAAATTGGAGAGATTTAGTTTGCAATATCTTTTACTACACTTGTGTGYGGTTACTGCAAACAAAGAATACCAGAATGCAGATTGGAGACAACGCCCTCTTCCTGATGTTATGATAAGATATGGCAGAGAAGATACACACTATCTGCTGTATATATATGACCAACTGAGAATCAAGTTATTTGCTTTGTCCAAGGAATCTGAAAGTTCTGAAAATCCTCTGGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAACTATATGAGAAAGAGCTTCTAACAGAAGACTCTTACCTTCATATATATGGGTTGCTGGGGGCTGGTTTTAATGCTCAGCAGCTTGCTGTTGTTTCAGGGCTTAATGAATGGCGGGACATTTTGGCTCGTTCAGAAGATGAGAGTACTGGCTTTATTTTACCAAATAAAGTACTTCTTGAAATAGCAAAGCAGATGCCTGTTACTATAAGCGGTCTTCGGCGATTGACATCATCAAAGCTCCCATATGTTGATCACAATCTTGATGTCATTGTCAACATTGTCAGACATGCCATTCAAAATGCTGCTCCTTTTGAAGAAGCGGCACTACGCTTGAAAGAAACATATGCTGCAAAAATGAAGGAAGCAAGATTGAAAGCAGCACAAGAAGCAAGTGTCGTAGATGCTGCTCCTGTTGAAGATGGAGTAGAAGCTTCTCATCTGCTAGATTTTGAACATACAGCCGAAGAAGAAAGTACTGTCATTGATAATTCAACCTGTGTTAATATCTCAGAGACCCTTCCATTTTCTTATGATCTGAAGGAGGATTGCTCTCAGCATGAAGATATGAATGGACAAGTAAAAATTAAATCCAGTTGTCTAACTTTAGAGCTTCCACAGGTAWTAGGAGGGCCTATTGATGCTATTGCTGATGCTCTGTCAGGCGATTCAGCTTCAAGAAATAGGCTTAATCCTAATGAGAAGGTCAAGGACGAGATCAAGCTAGATCGCATTAGGATGTCAGTCAAGCTGGAGCCAGTTTCCGCTGCTGTGTCGGCTGATACGGTGATGATAGACTCCAGTATAGATTCCGGCTGTATGACTCAGAACAACCTATTAGGCTCTGAATGA 2073 0.451 MNVDRYLKELSGSSQRIPTEQSFHHFYLNFDEFKRPIDEIARRSQSMLESIGATTHAWNTGVDFPSDIDDAYEWVVDMNDELLEWFDESVSEVRKAREEDEEFEEVELENGFGLVRVKKEGRGVGKKVEAAGTTETTKPKVSFHLATVRKPQDVYDIVVNNTNVPFEHIWLEKSEDDQRFIHPLEKHSYLEFVDKNLEGLVPMKPPAMECTPFKLVEDVKGLKELAAKLHAADEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRVHVGPYLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERFSLQYLLLHLCXVTANKEYQNADWRQRPLPDVMIRYGREDTHYLLYIYDQLRIKLFALSKESESSENPLVEVYKRSYDVCMQLYEKELLTEDSYLHIYGLLGAGFNAQQLAVVSGLNEWRDILARSEDESTGFILPNKVLLEIAKQMPVTISGLRRLTSSKLPYVDHNLDVIVNIVRHAIQNAAPFEEAALRLKETYAAKMKEARLKAAQEASVVDAAPVEDGVEASHLLDFEHTAEEESTVIDNSTCVNISETLPFSYDLKEDCSQHEDMNGQVKIKSSCLTLELPQVXGGPIDAIADALSGDSASRNRLNPNEKVKDEIKLDRIRMSVKLEPVSAAVSADTVMIDSSIDSGCMTQNNLLGSE* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2839 690 SUPERFAMILY HRDC-like 414 508 IPR010997 GO:0000166|GO:0044237
Amo16g2839 690 Gene3D HRDC domain 421 512 IPR044876 -
Amo16g2839 690 SMART hrdc7 432 512 IPR002121 GO:0003676
Amo16g2839 690 CDD Rrp6p_like_exo 209 401 - -
Amo16g2839 690 SUPERFAMILY Ribonuclease H-like 148 404 IPR012337 -
Amo16g2839 690 Gene3D - 140 420 IPR036397 GO:0003676
Amo16g2839 690 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 608 IPR045092 GO:0000175|GO:0000467
Amo16g2839 690 Pfam 3'-5' exonuclease 215 380 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo16g2839 690 Pfam HRDC domain 435 501 IPR002121 GO:0003676
Amo16g2839 690 PANTHER 3'-5' EXONUCLEASE 1 608 - -
Amo16g2839 690 SMART 35exoneu6 213 382 IPR002562 GO:0003676|GO:0006139|GO:0008408
Amo16g2839 690 ProSiteProfiles HRDC domain profile. 432 512 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2839 Amo-Chr16 125989035 125998568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2839 K12591 - gmx:100804872 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2839 16 125989035 125998568 Amo16g2839 16 125989035 125998568 ECH
Amo16g2839 16 125989035 125998568 Amo06g2152 06 77692287 77695536 hybridization