Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2722 ATGAAAATGGAGGGTGATCTGAAGCAGAAGCTGCTGGTGCCTTCTTCAGGAGGAGTAGAAGAGGAAGAGGGCTTGTCACTGGTTAGGAGGGTGTGGGAAGAGAGCAAGAAGATGTGGATAGTGGCGGCGCCAGCCATATTCACAAGAGCTTCCACGTTTGGAATCCAAGTTATAAGCCAAGCGTTTGTTGGACATCTTGGTTCTAAGGAACTCGCTGCTTTCGCTCTTGTTTACACCGTTCTTATCAGGTTCGCTAACGGGATTCTGTTAGGAATGGCGAGTGCTTTGTCAACACTGTGTGGTCAAGCATACGGTGCAAAGGAATATGGCATGATGGGAGTTTACCTTCAAAGATCATGGATTGTTTTGTTCCTAACTTCACTGATTCTTCTTCCGGTGTTCATCTTCACCACCCCAATTTTAAGCCTCTTGGGCCAAGATGAAACAATAGCACAAGTGTCAGGAACCATTTCACTTTGGTCAATTCCTATCATGTTTGCCTTTATCGTATCCTTCACTACCCAGACATTCCTGCAGTCGCAAAGCAAGAACGTGATTATCGCCTTCTTGGCAGCTTTCTCCATAGTCCTTCACATCTTCCTTTCTTGGCTTACCACTATGAAGTACAAATTGGGTCTTCCTGGTGCAATGACCTCCACTAGTTTGGCGTATTGGATTCCCAACTTTGGTCAACTCATATTCATTTTCGGTTGGTGCAAGCAAACATGGCATGGGTTCTCATTCTTGGCATTCAAAGACCTTTGGCCTGTTGTTAAGCTTTCGCTTTCATCCGGTGCCATGTTGTGTCTTGAGCTATGGTACAACACAATATTGGTTCTTTTGACAGGTAACCTGAGAAATGCAGAGGTGGAAATCGATGCTCTGTCTATATGTCTTAACATCAATGGATGGGAAATGATGATATCACTTGGGTTCATGGCTGCTGCTAGCGTACGAGTGGCGAATGAGCTTGGAAGAGGAAGTGCCAAGGCTGCCAAGTTCTCGATCCTAGTGACTGTGCTAACATCATTGGCCATTGGGTTCTTTCTGTTTGTATTCTTCTTGTTGTTTAGGGAACGACTTGCTTACATATTTACCACAGATGAGCATGTTGCCCGGGCAGTCGGTAATTTGTCACCATTGTTATCAGTCTCTATATTACTAAACAGCGTTCAGCCCGTACTCTCAGGTGTTGCGATTGGAGCCGGTTGGCAAAGCATTGTTGCTTATGTTAACATAGGTTGCTATTACCTCATTGGAATTCCTGTCGGTATTGTGCTTGGTCATGTTCTTGATTTGCAAGTCGAGGGAATTTGGGTTGGAATGTTGTTTGGAACTTTTATTCAAACCGTAGTGCTTGTTATAATCACCTACAAAACTAACTGGGATGAGCAGGTGGTCATAGCTCGTTCAAGAATTAGCAAGTGGGCTAAAATGGATGGCCTCGATCATGAATCAAAACCGGATTCATCAGAAAGTTAA 1482 0.4433 MKMEGDLKQKLLVPSSGGVEEEEGLSLVRRVWEESKKMWIVAAPAIFTRASTFGIQVISQAFVGHLGSKELAAFALVYTVLIRFANGILLGMASALSTLCGQAYGAKEYGMMGVYLQRSWIVLFLTSLILLPVFIFTTPILSLLGQDETIAQVSGTISLWSIPIMFAFIVSFTTQTFLQSQSKNVIIAFLAAFSIVLHIFLSWLTTMKYKLGLPGAMTSTSLAYWIPNFGQLIFIFGWCKQTWHGFSFLAFKDLWPVVKLSLSSGAMLCLELWYNTILVLLTGNLRNAEVEIDALSICLNINGWEMMISLGFMAAASVRVANELGRGSAKAAKFSILVTVLTSLAIGFFLFVFFLLFRERLAYIFTTDEHVARAVGNLSPLLSVSILLNSVQPVLSGVAIGAGWQSIVAYVNIGCYYLIGIPVGIVLGHVLDLQVEGIWVGMLFGTFIQTVVLVIITYKTNWDEQVVIARSRISKWAKMDGLDHESKPDSSES* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2722 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 476 - -
Amo16g2722 493 TIGRFAM matE: MATE efflux family protein 44 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo16g2722 493 PANTHER PROTEIN DETOXIFICATION 16 476 - -
Amo16g2722 493 CDD MATE_eukaryotic 34 466 IPR045069 GO:0042910|GO:1990961
Amo16g2722 493 Pfam MatE 266 425 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo16g2722 493 Pfam MatE 44 204 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2722 Amo-Chr16 120483079 120487471 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2722 K03327 - gmx:100792122 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2722 16 120483079 120487471 Amo16g2722 16 120483079 120487471 ECH
Amo16g2722 16 120483079 120487471 Amo06g2012 06 73075992 73090675 hybridization