Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2557 ATGGGAGAGATGTTGGAGCTGAGCCCGGACGAAGAGAGAATAATGATCAGAGACATTGCCCTCTCTTCTCAATCTAATAGCAAAGAAGGCGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGATCAGTCAAACAATTCTTATGATGGTTCCTCCTTTTTAGAATATGGTGACTTGCCAAATTCAAATGCTTTAAAGAGGCCTGCTGTTATTGATAATTCTGATTTGATAGATGATTCTGTGTCAGAGGACTCTAGTACGGGTATTGATATTCATGATACACTTTTAGAAGGTCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATATGCATGGTATGGTGGTGGACCTACATTGCCAAGGAAAGTTATCAGTGCAGGTCTTTCCCAGACAGAGCTGGCCGTAGAGGTGTATCCTCTACGGCTTCAATTACTCATGTTGCCAAGAAATGATCGTACCAGCATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGGAAAGCTTGTGAAATATTTGATCTTCCATTGGACCAAGTATGTATTTGGGATTACTATTCCCGCCGGAAGAATGCCTTGATGAATGACATGGACAAAACACTTGATGATGCCAATATACAAATGGACCAAGATATTCTTGTTGAGGTTATCAACAATACGAATGACACAAGCTCTGCCCATGAAAATGGGTCTGCGCAGAGGGAAGCAAGTTCTGTTCTTGTCGAGCCTTCAAACTCAAATTTATCAATTGCTGGTGGCCTGTCTGCTAGCAGGGTTCCCTCTAGAAGCTATAATGCAGATCTTTCTTCTTCTCAGAACCTAAATCCTCCAGCCAGAGATGCGGAAAATCCTTATGGGAGTGGTGTCACCACACGAGGTTCAGTGAGCGGTCTCACCGGGCTGCTGAATCTTGGCAACACTTGTTTCATGAATAGTGCAATACAGTGTCTTGTCCATACACCAGAGTTTGCTAGGTACTTTCGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAGCTAGCCCTAGCCTTTGGTGAGTTGCTTCGTAAACTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAAGCCAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAGCACGATTCTCAGGAGCTTTTAGCATTTCTGCTGGATGGTCTTCACGAAGACTTGAATCGTGTTAAACACAAACCATATATAAAGTCTCGAGATGCTGATGGCCGACCAGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGCAATGATTCCATAATTGTTGATGTTTGCCAGGGGCAATACAAGTCAACATTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACGTTTGATCCTTTTATGTACCTTTCGTTGCCACTCCAGTCAACCAGCAGCAGGACCATGACAGTGACAGTTTTTACTTGTGATGGAACTGCCCTGCCATCTCCTTGTACTGTAACTGTGCCTAAGCAGGGACGCTGCAAAGATCTGATTCAGGCTCTCAGCACTGCTTGCTCATTGAAGCATAACGAGAGACTGTTGCTTGTAGAGGTACGAAACCATTTGATTCATAGATTTCTTGAAGATCCTCTTCAGTTGTTGTCCACTATCAAAGATGATGACCATGTTGCTGTTTACAAGATTCCAAAGATAGAGAAAAACACAAAGTATCTCCAGTTGATCCACCGCCGGAGAGAGCAGAGCAGTGACTCGCACACTGTATCAGGATGGAAGCCATATGGAACACCTATTGTGTCATTGATCTCATGTGATGATCCAGTTACAAGAGGCGATATACAAGTGATAGTTAATCGTATGCTCTCTCCACTGTTGAGGAAAAGTGGCAATACAGAGCACACTAATACAGAAACCAGCATCACAAAAGCTGCTGGCGACAATGCTTCTAGCGATGCATATGCTACCAACTTGGTGTCAAATTCAGTAAATAAGGCTGGACGAACACCAACACTACCCCTTCTTTTGATAGATGAAAGCAATGCTTGCATTGATCTTTCTATGGGAGAGGATAAAGTTGTTAAACTTCCTTCTTCGTCAACACTTCTAGTGTATATTGATTGGTCTCAAAAGCTTCTGGAGAAGTATGATACTCATCCACTTGAGATTTTGCCTGAAGTTTTAAAATATGGGCCCGTGTCCAAGAAAGCTCGTACTGAACCCCTCTCATTGTACACCTGTTTGGAAGCTTTTCTGCGCGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCCCAATGCAAAGAGAGAAGACAAGCAAGCAAAAAGCTTGACTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACCTTTGTTAACTTCCCGGTTCATGACTTTGACTTAACGAACTATGTAGCCAATAAAAACAATTCTCGGCGTCAGCTGTATGAATTGTATGCCCTCACAAACCATTATGGTAGTATGGGTAGTGGTCATTACACTGCACATATCAAGCTCTTAGATGAAAACAGGTGGTACAATTTTGACGACAGCCACATATCACCCATAAGTGAGGATGATGTGAACACTGCAGCTGCCTATGTTCTATTTTACCGGAGGGTGCGGAGTGACGATGATTCTGTTAGCAATGGGGCCTAG 2751 0.434 MGEMLELSPDEERIMIRDIALSSQSNSKEGDTFFLITQRWWQHWIEYVNQDQSNNSYDGSSFLEYGDLPNSNALKRPAVIDNSDLIDDSVSEDSSTGIDIHDTLLEGRDYVLLPQEVWNQLYAWYGGGPTLPRKVISAGLSQTELAVEVYPLRLQLLMLPRNDRTSIRISKKETIGQLHRKACEIFDLPLDQVCIWDYYSRRKNALMNDMDKTLDDANIQMDQDILVEVINNTNDTSSAHENGSAQREASSVLVEPSNSNLSIAGGLSASRVPSRSYNADLSSSQNLNPPARDAENPYGSGVTTRGSVSGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTSSRTMTVTVFTCDGTALPSPCTVTVPKQGRCKDLIQALSTACSLKHNERLLLVEVRNHLIHRFLEDPLQLLSTIKDDDHVAVYKIPKIEKNTKYLQLIHRRREQSSDSHTVSGWKPYGTPIVSLISCDDPVTRGDIQVIVNRMLSPLLRKSGNTEHTNTETSITKAAGDNASSDAYATNLVSNSVNKAGRTPTLPLLLIDESNACIDLSMGEDKVVKLPSSSTLLVYIDWSQKLLEKYDTHPLEILPEVLKYGPVSKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPVHDFDLTNYVANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDDVNTAAAYVLFYRRVRSDDDSVSNGA* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2557 916 MobiDBLite consensus disorder prediction 275 302 - -
Amo16g2557 916 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Amo16g2557 916 Gene3D - 150 238 - -
Amo16g2557 916 CDD Peptidase_C19R 749 903 - -
Amo16g2557 916 Gene3D - 3 149 IPR035927 -
Amo16g2557 916 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 6 915 - -
Amo16g2557 916 SUPERFAMILY DUSP-like 7 136 IPR035927 -
Amo16g2557 916 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 847 864 IPR018200 GO:0004843|GO:0006511
Amo16g2557 916 SMART dusp 26 139 IPR006615 GO:0004843
Amo16g2557 916 Pfam Ubiquitin carboxyl-terminal hydrolase 312 902 IPR001394 GO:0004843|GO:0016579
Amo16g2557 916 SUPERFAMILY Cysteine proteinases 310 905 IPR038765 -
Amo16g2557 916 Gene3D Cysteine proteinases 724 912 - -
Amo16g2557 916 Pfam DUSP domain 30 136 IPR006615 GO:0004843
Amo16g2557 916 MobiDBLite consensus disorder prediction 275 291 - -
Amo16g2557 916 SUPERFAMILY Ubiquitin-like 162 229 IPR029071 -
Amo16g2557 916 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 905 IPR028889 -
Amo16g2557 916 Gene3D Cysteine proteinases 301 539 - -
Amo16g2557 916 ProSiteProfiles DUSP domain profile. 7 136 IPR006615 GO:0004843
Amo16g2557 916 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2557 Amo-Chr16 110771890 110780358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2557 758 907 Miscellaneous Gene Families AT4G31670 34.641 1.65e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2557 - - gmx:100794067 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2557 16 110771890 110780358 Amo06g1838 06 66236460 66244056 hybridization