Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1838 ATGTTGGAGCTGAGCCCGGACGAAGAGAGAATAATGATCAGAGACATTGCCCTCTCTTCTCAATCTAATAGCAAAGAAGGCGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGATCAGTCAAACAATTCTTATGATGGTTCCTCCTTTTTAGAATATGGTGACTTGCCAAATTCAAATGCTTTAAAGAGGCCTGCTGTTATTGATAATTCTGATTTGATAGATGATTCTGTGTCAGAGGACTCTAGTACGGGTATTGATATTCATGATACACTTTTAGAAGGTCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATATGCATGGTATGGTGGTGGACCTACATTGCCAAGGAAAGTTATCAGTGCAGGTCTTTCCCAGACAGAGCTGGCCGTAGAGGTGTATCCTCTACGGCTTCAATTACTCATGTTGCCAAGAAATGATCGTACCAGCATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGGAAAGCTTGTGAAATATTTGATCTTCCATTGGACCAAGTATGTATTTGGGATTACTATTCCCGCCGGAAGAATGCCTTGATGAATGACATGGACAAAACACTTGATGATGCCAATATACAAATGGACCAAGATATTCTTGTTGAGGTTATCAACAATACGAATGACACAAGCTCTGCCCATGAAAATGGGTCTGCGCAGAGGGAAGCAAGTTCTGTTCTTGTCGAGCCTTCAAACTCAAATTTATCAATTGCTGGTGGCCTGTCTGCTAGCAGGGTTCCCTCTAGAAGCTATAATGCAGATCTTTCTTCTTCTCAGAACCTAAATCCTCCAGCCAGAGATGCGGAAAATCCTTATGGGAGTGGTGTCACCACACGAGGTTCAGTGAGCGGTCTCACCGGGCTGCTGAATCTTGGCAACACTTGTTTCATGAATAGTGCAATACAGTGTCTTGTCCATACACCAGAGTTTGCTAGGTACTTTCGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAGCTAGCCCTAGCCTTTGGTGAGTTGCTTCGTAAACTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAAGCCAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAGCACGATTCTCAGGAGCTTTTAGCATTTCTGCTGGATGGTCTTCACGAAGACTTGAATCGTGTTAAACACAAACCATATATAAAGTCTCGAGATGCTGATGGCCGACCAGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGCAATGATTCCATAATTGTTGATGTTTGCCAGGGGCAATACAAGTCAACATTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACGTTTGATCCTTTTATGTACCTTTCCTTGCCACTCCAGTCAACCAGCAGCAGGACCATGACAGTGACAGTTTTTACTTGTGATGGAACTGCCCTGCCATCTCCTTGTACTGTAACTGTGCCTAAGCAGGGACGCTGCAAAGATCTGATTCAGGCTCTCAGCACTGCTTGCTCATTGAAGCATAACGAGAGACTGTTGCTTGTAGAGGTACGAAACCATTTGATTCATAGATTTCTTGAAGATCCTCTTCAGTTGTTGTCCACTATCAAAGATGATGACCATGTTGCTGTTTACAAGATTCCAAAGATAGAGAAAAACACAAAGTATCTCCAGTTGATCCACCGCCGGAGAGAGCATGACTCGCACACTGTATCAGGATGGAAGCCATATGGAACACCTATTGTGTCATTGATCTCATGTGATGATCCAGTTACAAGAGGCGATATACAAGTGATAGTTAATCGTATGCTCTCTCCACTGTTGAGGAAAAGTGGCAATACAGAGCACACTAATACAGAAACCAGCATCACAAAAGCTGCTGGCGACAATGCTTCTAGCGATGCATATGCTACCAACTTGGTGTCAAATTCAGTAAATAAGGCTGGACGAACACCAACACTACCCCTTCTTTTGATAGATGAAAGCAATGCTTGCATTGATCTTTCTATGGGAGAGGATAAAGTTGTTAAACTTCCTTCTTCGTCAACACTTCTAGTGTATATTGATTGGTCTCAAAAGCTTCTGGAGAAGTATGATACTCATCCACTTGAGATTTTGCCTGAAGTTTTAAAATATGGGCCCGTGTCCAAGAAAGCTCGTACTGAACCCCTCTCATTGTACACCTGTTTGGAAGCTTTTCTGCGCGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCCCAATGCAAAGAGAGAAGACAAGCAAGCAAAAAGCTTGACTTGTGGAGGCTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACCTTTGTTAACTTCCCGGTTCATGACTTTGACTTAACGAACTATGTAGCCAATAAAAACAATTCTCGGCGTCAGCTGTATGAATTGTATGCCCTCACAAACCATTATGGTAGTATGGGTAGTGGTCATTACACTGCACATATCAAGCTCTTAGATGAAAACAGGTGGTACAATTTTGACGACAGCCACATATCACCCATAAGTGAGGATGATGTGAACACTGCAGCTGCCTATGTTCTATTTTACCGGAGGGTGCGGAGTGACGATGATTCTGTTAGCAATGGGGCCTAG 2736 0.4331 MLELSPDEERIMIRDIALSSQSNSKEGDTFFLITQRWWQHWIEYVNQDQSNNSYDGSSFLEYGDLPNSNALKRPAVIDNSDLIDDSVSEDSSTGIDIHDTLLEGRDYVLLPQEVWNQLYAWYGGGPTLPRKVISAGLSQTELAVEVYPLRLQLLMLPRNDRTSIRISKKETIGQLHRKACEIFDLPLDQVCIWDYYSRRKNALMNDMDKTLDDANIQMDQDILVEVINNTNDTSSAHENGSAQREASSVLVEPSNSNLSIAGGLSASRVPSRSYNADLSSSQNLNPPARDAENPYGSGVTTRGSVSGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTSSRTMTVTVFTCDGTALPSPCTVTVPKQGRCKDLIQALSTACSLKHNERLLLVEVRNHLIHRFLEDPLQLLSTIKDDDHVAVYKIPKIEKNTKYLQLIHRRREHDSHTVSGWKPYGTPIVSLISCDDPVTRGDIQVIVNRMLSPLLRKSGNTEHTNTETSITKAAGDNASSDAYATNLVSNSVNKAGRTPTLPLLLIDESNACIDLSMGEDKVVKLPSSSTLLVYIDWSQKLLEKYDTHPLEILPEVLKYGPVSKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPVHDFDLTNYVANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDDVNTAAAYVLFYRRVRSDDDSVSNGA* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1838 911 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 910 - -
Amo06g1838 911 Gene3D Cysteine proteinases 298 536 - -
Amo06g1838 911 SUPERFAMILY Ubiquitin-like 159 226 IPR029071 -
Amo06g1838 911 SMART dusp 23 136 IPR006615 GO:0004843
Amo06g1838 911 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 310 325 IPR018200 GO:0004843|GO:0006511
Amo06g1838 911 Gene3D - 147 235 - -
Amo06g1838 911 CDD Peptidase_C19R 744 898 - -
Amo06g1838 911 Gene3D Cysteine proteinases 719 907 - -
Amo06g1838 911 ProSiteProfiles DUSP domain profile. 4 133 IPR006615 GO:0004843
Amo06g1838 911 SUPERFAMILY DUSP-like 5 133 IPR035927 -
Amo06g1838 911 MobiDBLite consensus disorder prediction 272 299 - -
Amo06g1838 911 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 309 900 IPR028889 -
Amo06g1838 911 SUPERFAMILY Cysteine proteinases 307 900 IPR038765 -
Amo06g1838 911 MobiDBLite consensus disorder prediction 272 288 - -
Amo06g1838 911 Pfam DUSP domain 27 133 IPR006615 GO:0004843
Amo06g1838 911 Gene3D - 3 146 IPR035927 -
Amo06g1838 911 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 3 910 - -
Amo06g1838 911 Pfam Ubiquitin carboxyl-terminal hydrolase 309 897 IPR001394 GO:0004843|GO:0016579
Amo06g1838 911 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 842 859 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1838 Amo-Chr6 66236460 66244056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1838 753 902 Miscellaneous Gene Families AT4G31670 34.641 1.65e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1838 - - gmx:100794067 1595.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2557 16 110771890 110780358 Amo06g1838 06 66236460 66244056 hybridization