Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2492 ATGGGCAACTCTGAGTCTCAGTCAGTTCCAACCGATCCCCGTTTTGTTTCAGCTTCCAGAGCCTTTACTCACCACGAACTTGAAGACTTAAGGTCTCTCTTCGATTCGCTCGCTGCCAAGTCTCAGAGCAATGCCCAATACATCTCTTCCTCTGTTTTTCAGTCATATTTTGGACTCCATGGCCCGCTTGGGGATAGAATTTTCCATTTAGTTACTCAAGAGCGCAAGGATCAGCATTTAACTTTTGAAGACCTCGTTGTTGCTAAGGCTACTTACGAGAAAGGAACAAGAGATGACATTGAAGAATTCATCTTTCGCTTATTGGATGTAAATGGGGATAAATTTGTAGGGAGGTCTGATTTGGAGTCTGTTATGATTTCCATTTTTAAGGATATATTATGCATAAAAGATAATGAAGCTAGATCAAGTTCAGATAGGGCATTGTCAACATATTTCTAA 459 0.4052 MGNSESQSVPTDPRFVSASRAFTHHELEDLRSLFDSLAAKSQSNAQYISSSVFQSYFGLHGPLGDRIFHLVTQERKDQHLTFEDLVVAKATYEKGTRDDIEEFIFRLLDVNGDKFVGRSDLESVMISIFKDILCIKDNEARSSSDRALSTYF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2492 152 ProSiteProfiles EF-hand calcium-binding domain profile. 96 131 IPR002048 GO:0005509
Amo16g2492 152 SUPERFAMILY EF-hand 1 126 IPR011992 -
Amo16g2492 152 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 147 - -
Amo16g2492 152 Gene3D - 1 150 - -
Amo16g2492 152 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 147 - -
Amo16g2492 152 ProSitePatterns EF-hand calcium-binding domain. 109 121 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2492 Amo-Chr16 105755359 105756601 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2492 - - adu:107494057 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2492 16 105755359 105756601 Amo16g2492 16 105755359 105756601 ECH
Amo16g2492 16 105755359 105756601 Amo06g1797 06 63549317 63554597 hybridization