Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1797 ATGGGCAACTCTGAGTCTCAGTCAGTTCCAACCGATCCCCGTTTTGTTTCAGCTTCCAGAGCCTTTACTCACCACGAACTTGAAGACTTAAGGTCTCTCTTCGATTCGCTCGCTGCCAAGTCTCAGAGCAATGCCCAATACATCTCTCCCTCTGTTTTTCAGTCATATTTTGGACTCCATGGCCCGCTTGGGGATAGAATGTTCCATTTAGTTACTCAAGAGCGCAAGGATCAGCATTTAACTTTTGAAGACCTCGTTGTTGCTAAGGCTACTTACGAGAAAGGAACAAGAGATGACATTGAAGAATTCATCTTTCGCTTATTGGATGTAAATGGGGATAAATTTGTAGGGAGGTCTGATTTGGAGTCTGTTATGATTTCCATTTTTAAGGATATATTATGCATAAAAGATAATGAAGCTAGATCAAGTTCAGATCAGGGCATTGTCAACATATTTCTAAATGCTGCAAATTTCTCAATGCATGAAGAAGGGTGCACTGAGGAGTCTATGTCTTTTGAGGATTTCAGAAGTTGGTGCACTCATGCCCCATCTGCTAGGAAGCTTCTTGGGAGCTTGCTGATGCCACCTGATTCAGGACGACCAGGTTCTCAAATTCCAAACCTGTTGACCTCAAACGACATTGATCCTAGCATTTTACTTTTGAGAAAGGAATATGCTTGGCATATAGGAGGTGCACTTTCTCAGCACGAGCTGGAAGATTGGATGCTTTTATATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGAAACATTTCAAATCATCAAGGCCCCAGTGTGTTAATTATTAAGGATAAAGAGGGTTATATATACGGAGGATATGCTTCTCAGCCATGGGAACGGCATGCTGATTTTTATGGAGATTTGAAATGTTTCCTTTTTCAACTGAATCCAAAGGCATCCATTTTCCGGCCTACTGGAGCAAACCATAACCTACAATGGTGTGCCATCAATTTCAGTTCGGCAGACATTCCAAATGGCATTGGATTCGGAGGACGAGTTAGTCACTATGGTGTTTTTATCTCGGCAAACTTCGATCAAGGCCATACATTTGCATGTTCCACATTTGGTAGCCCGTGCCTCTCTAAGACCAACCGCATATTGCCGGAAGTAATAGAGTGCTGGGGAGTGACTCAAGGAACGGTATTAGGCAAGAATGATGCCGTCAAAGGCACCATACTCGAAAGATTTAAGGAAGATCGCCACATGCTCAACATGGTTGGGCTAGCGAATTCCAGTGAGTGA 1272 0.4261 MGNSESQSVPTDPRFVSASRAFTHHELEDLRSLFDSLAAKSQSNAQYISPSVFQSYFGLHGPLGDRMFHLVTQERKDQHLTFEDLVVAKATYEKGTRDDIEEFIFRLLDVNGDKFVGRSDLESVMISIFKDILCIKDNEARSSSDQGIVNIFLNAANFSMHEEGCTEESMSFEDFRSWCTHAPSARKLLGSLLMPPDSGRPGSQIPNLLTSNDIDPSILLLRKEYAWHIGGALSQHELEDWMLLYHSSVNGLSFNTFLGNISNHQGPSVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPKASIFRPTGANHNLQWCAINFSSADIPNGIGFGGRVSHYGVFISANFDQGHTFACSTFGSPCLSKTNRILPEVIECWGVTQGTVLGKNDAVKGTILERFKEDRHMLNMVGLANSSE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1797 423 ProSiteProfiles TLDc domain profile. 219 387 IPR006571 -
Amo06g1797 423 ProSiteProfiles EF-hand calcium-binding domain profile. 96 131 IPR002048 GO:0005509
Amo06g1797 423 Pfam TLD 243 386 IPR006571 -
Amo06g1797 423 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 415 - -
Amo06g1797 423 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 415 - -
Amo06g1797 423 SUPERFAMILY EF-hand 1 196 IPR011992 -
Amo06g1797 423 SMART 109ultra 218 387 IPR006571 -
Amo06g1797 423 Gene3D - 1 191 - -
Amo06g1797 423 ProSitePatterns EF-hand calcium-binding domain. 109 121 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1797 Amo-Chr6 63549317 63554597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1797 104 422 EF-hand Containing Proteins AT5G06260 61.180 1.48e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1797 - - adu:107494057 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2492 16 105755359 105756601 Amo06g1797 06 63549317 63554597 hybridization