Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2487 ATGTTATTAAATATGCTTGAAGGAAAAGTGGCATTAATAACTGGAGGAGCAAGCGGAATAGGCAAACGCACGGCGGAAATATTCGCAGAGCACGGAGCCAAAGTAGTGATCGCAGATGTCCAAGACGAACTAGGCCACGCGGTTGTCCAATCCATAGGACCATCCACATGCACCTTCGTCCACTGCGACGTCACCGACGAGGACCAAATCAAGCGCGCCGTCAACACCGCCATCGAAGCATACGGCAAGCTAGACATCATGTTCAACAACGCCGGCATAGCAGACCCCAACAAGGCCCGAATAATCGACAACCACAAGGCCGATTTCGAGCGCGTCCTCAGCCATGCCTCGCAGCCCATGATCAAGGCCGGTGGCGGCAGCATAATCTCGACGGCTAGCGTCAGCTCGTACGTGGGCGGCGCCGCCTCCCACGCCTACTGCTGCGCTAAGCACGCGGTGGTTGGGCTGACCAAGAATGCGGCGGTGGAGCTCGGACAGTTTGGGATCAGAGTGAATTGCTTGTCGCCTTACGCTCTTGCGACTCCTTTGGCTACCACGTTCGTCGGGGTGAACGATGAGGAGCTTGAGAATGTGATGAACTCGCTCGCGAATCTTAAAGGTGTTACCCTTAAAACTGATGACGTGGCCAATGCTGCGCTTTATTTTGCTAGCGATGATTCCAGGTATGTCAGTGGACAGAACTTGCTCGTTGACGGTGGCTTCAGCATTGTTAACCCCTCCTTTCACATGTTTCAGTATCCACAAGACACTTAG 774 0.5375 MLLNMLEGKVALITGGASGIGKRTAEIFAEHGAKVVIADVQDELGHAVVQSIGPSTCTFVHCDVTDEDQIKRAVNTAIEAYGKLDIMFNNAGIADPNKARIIDNHKADFERVLSHASQPMIKAGGGSIISTASVSSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATTFVGVNDEELENVMNSLANLKGVTLKTDDVANAALYFASDDSRYVSGQNLLVDGGFSIVNPSFHMFQYPQDT* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2487 257 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 5 253 - -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 167 184 IPR002347 -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 146 165 IPR002347 -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 205 225 IPR002347 -
Amo16g2487 257 PRINTS Glucose/ribitol dehydrogenase family signature 120 136 IPR002347 -
Amo16g2487 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 IPR002347 -
Amo16g2487 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Amo16g2487 257 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 IPR002347 -
Amo16g2487 257 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 253 - -
Amo16g2487 257 Pfam Enoyl-(Acyl carrier protein) reductase 15 242 - -
Amo16g2487 257 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 244 IPR036291 -
Amo16g2487 257 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 133 161 IPR020904 GO:0016491
Amo16g2487 257 Gene3D - 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2487 Amo-Chr16 105633121 105635123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2487 6 248 Miscellaneous Gene Families AT2G29150 32.031 2.78e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2487 - - gmx:100802915 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2487 16 105633121 105635123 Amo16g2487 16 105633121 105635123 ECH
Amo16g2487 16 105633121 105635123 Amo06g1794 06 63457709 63458733 hybridization