Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1794 ATGTGCAGGCTTGAAGGAAAAGTGGCATTAATAACTGGAGGAGCAAGCGGAATAGGCAAACGCACGGCGGAAATATTCGCAGAGCACGGAGCCAAAGTAGTCATTGCAGATGTCCAAGACGAACTGGGCCACGCGGTTGTCCAATCCATAGGACCATCCACATGCACCTTCGTCCACTGCGACGTCACCGACGAGGACCAAATCAAGCGCGCCGTCAACACCGCCGTCGAAGCATACGGCAAGCTAGACATCATGTTCAACAACGCCGGCATAGCAGACCCCAACAAGGCCCGAATAATCGACAACCACAAGGCCGATTTCGAGCGCGTCCTCAGCGTCAACGTAACCGGAGTTTTCTTGGGGATCAAGCATGCCTCGCAGCCCATGATCAAGGCCGGAGGCGGCAGCATAATCTCCATGGCTAGCGTCAGCTCGTACGTGGGCGGCGCCGCCTCCCACGCCTACTGCTGTGCTAAGCACGCGGTGGTTGGGCTGACCAAGAATGCGGCGGTGGAGCTCGGACAGTTTGGGATCAGAGTGAATTGCTTGTCGCCTTACGCTCTTGCGACTCCTTTGGCTACCAAGTTCGTCGGGGTGAACGATGAGGAGCTTGAGAATGTGATGAACTCGCTCGCGAATCTTAAAGGTGTTACCCTTAAAACTGATGACGTGGCCAATGCTGCGCTTTATTTTGCTAGCGATGATTCCAGGTATGTCAGTGGACAGAACTTGCTAGTTGACGGTGGCTTCAGCATTGTTAACCCCTCCTTTCACATGTTTCAGTATCCACAAGACACTTAG 801 0.5393 MCRLEGKVALITGGASGIGKRTAEIFAEHGAKVVIADVQDELGHAVVQSIGPSTCTFVHCDVTDEDQIKRAVNTAVEAYGKLDIMFNNAGIADPNKARIIDNHKADFERVLSVNVTGVFLGIKHASQPMIKAGGGSIISMASVSSYVGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYALATPLATKFVGVNDEELENVMNSLANLKGVTLKTDDVANAALYFASDDSRYVSGQNLLVDGGFSIVNPSFHMFQYPQDT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1794 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 IPR002347 -
Amo06g1794 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 IPR002347 -
Amo06g1794 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 IPR002347 -
Amo06g1794 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 253 IPR036291 -
Amo06g1794 266 Pfam Enoyl-(Acyl carrier protein) reductase 13 251 - -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 80 91 IPR002347 -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 129 145 IPR002347 -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 155 174 IPR002347 -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 176 193 IPR002347 -
Amo06g1794 266 PRINTS Glucose/ribitol dehydrogenase family signature 214 234 IPR002347 -
Amo06g1794 266 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 3 262 - -
Amo06g1794 266 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 3 262 - -
Amo06g1794 266 Gene3D - 1 261 - -
Amo06g1794 266 CDD secoisolariciresinol-DH_like_SDR_c 3 251 IPR045309 GO:0016616
Amo06g1794 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 142 170 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1794 Amo-Chr6 63457709 63458733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1794 1 260 Acyl Lipid Metabolism Gene Families AT1G62610 30.483 6.39e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1794 - - gmx:100802915 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2487 16 105633121 105635123 Amo06g1794 06 63457709 63458733 hybridization