Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2069 ATGTTCAGATTCTGGGGATCACAAGAGCAACAACCTCAGCACGATGGTTCTTCATCGCAGTCGTGGTATCCTCCATCGGTGATGAGCACGCCGAGCTCATCGAGGCCTGCCACACCCTCCGCCGCTTCCTCCACTGGCTACGCTTCTCCGAGGATACACCCTTCGTCGCATGTTCCGCCTGCCGAAGCTGCCGGCGTCATTGCCGCCTTGAAAGACAAGAGTATCGACGAGTTGAGGAAGATGTTGTCCGACAAGGATACTTATCAACAGTTCCTAAATTCGCTTGATATGGTCAAGACTCAAAATAATCTGAAAGATGAACTTTGCAAAGAGAATTTGCAGCTAGCGGAGGAAAATCTAAAAAAGGAACCTCGTATAATGGAACTCAGGAATCAAAGTAGCATTATTCGGACAACTGAGTTAGCTGCTGCTAAAGAGAAACTAAGCGAGCTTGAGAAACAGAAAGAAGAAATGCTGAAGATGAATTCCCCAGCATCCCTTATCCACAGGATTCAAGAGTCTATGAATAAGACAGATGAGGAATCTGAAAATCTACACCAGAAAATACTCGACAGAGAGATTGACCTTGCATCATTTTTGCAGAATTACAAGAAGCTACGTATCGCTTACCACCGTAAAAGTCTCATACATCTTGCTGCCAAGACATCAAATATATGA 678 0.4513 MFRFWGSQEQQPQHDGSSSQSWYPPSVMSTPSSSRPATPSAASSTGYASPRIHPSSHVPPAEAAGVIAALKDKSIDELRKMLSDKDTYQQFLNSLDMVKTQNNLKDELCKENLQLAEENLKKEPRIMELRNQSSIIRTTELAAAKEKLSELEKQKEEMLKMNSPASLIHRIQESMNKTDEESENLHQKILDREIDLASFLQNYKKLRIAYHRKSLIHLAAKTSNI* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2069 225 Pfam Modifier of rudimentary (Mod(r)) protein 71 215 IPR009851 -
Amo16g2069 225 MobiDBLite consensus disorder prediction 1 51 - -
Amo16g2069 225 ProSiteProfiles VPS37 C-terminal domain profile. 145 225 IPR009851 -
Amo16g2069 225 Coils Coil 168 188 - -
Amo16g2069 225 Gene3D Helix hairpin bin 149 218 IPR029012 -
Amo16g2069 225 MobiDBLite consensus disorder prediction 1 59 - -
Amo16g2069 225 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 1 225 - -
Amo16g2069 225 SUPERFAMILY Endosomal sorting complex assembly domain 164 213 IPR037202 -
Amo16g2069 225 Coils Coil 141 161 - -
Amo16g2069 225 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2069 Amo-Chr16 70196004 70199270 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2069 K12185 - gmx:100305851 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2069 16 70196004 70199270 Amo06g1461 06 42045433 42048063 hybridization
Amo16g2069 16 70196004 70199270 Amo12g3420 12 123390756 123392573 PCT
Amo12g3420 12 123390756 123392573 Amo16g2069 16 70196004 70199270 PCT