Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3420 ATGTCTTCAATCTTCACTAGATTTTGGGGATCACAAGAACAAGAACATTTACATCAGTCATCTTCAATGAGCTACACAAGTTCTTCTTCTTCTTCTAGGCCTTCACATGTTCCACCTGCTGAAGCTGCTGGAGTTATTGCTGCTTTGAAGGACAAAAGTGTTGATGAGTTGCGGAAAATTTCGTCCGAGAAAGATGCTTATCAACGGTTTTTACAGTCGCTTGAACAGGTCAAGATTCAAAATAATCTGAAAGATGAACTATGCAAGGAGAATATGCTGCTTGTTGATGAAAATCTACAAAAGGAACCTCGTGTTTTGGGACTAAAAAATCAGTGTAGAATCATTCGGACAAGTGAACTAGCTGCTGCACAAGAGAAACTAAAGGAGCTTGAGAAACAGAAAGAAGAAATGTTGAAGTTGAGTTCCCTACCATTCCTTCTTCATAGGATTCAAGGGGCTATGAACAAGACTGAAGAAGAATCAGAAGATCTGCACCAACAATTACTTGATAAAGAGATTGATCTTGGAGCTTTTCTGCAGAAATACAAGAAGCTACGTATTGCTTATCACAGTAAAAATCTGATACATCTTGCAGCTAGAACATCAAATATTTGA 615 0.3805 MSSIFTRFWGSQEQEHLHQSSSMSYTSSSSSSRPSHVPPAEAAGVIAALKDKSVDELRKISSEKDAYQRFLQSLEQVKIQNNLKDELCKENMLLVDENLQKEPRVLGLKNQCRIIRTSELAAAQEKLKELEKQKEEMLKLSSLPFLLHRIQGAMNKTEEESEDLHQQLLDKEIDLGAFLQKYKKLRIAYHSKNLIHLAARTSNI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3420 204 Coils Coil 147 174 - -
Amo12g3420 204 SUPERFAMILY Endosomal sorting complex assembly domain 145 192 IPR037202 -
Amo12g3420 204 MobiDBLite consensus disorder prediction 1 36 - -
Amo12g3420 204 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 17 204 - -
Amo12g3420 204 MobiDBLite consensus disorder prediction 1 42 - -
Amo12g3420 204 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 17 204 - -
Amo12g3420 204 Gene3D Helix hairpin bin 129 197 IPR029012 -
Amo12g3420 204 ProSiteProfiles VPS37 C-terminal domain profile. 124 204 IPR009851 -
Amo12g3420 204 Coils Coil 113 143 - -
Amo12g3420 204 Pfam Modifier of rudimentary (Mod(r)) protein 50 194 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3420 Amo-Chr12 123390756 123392573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3420 K12185 - gmx:100305851 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3420 12 123390756 123392573 Amo12g3420 12 123390756 123392573 ECH
Amo16g2069 16 70196004 70199270 Amo12g3420 12 123390756 123392573 PCT
Amo06g1461 06 42045433 42048063 Amo12g3420 12 123390756 123392573 PCT
Amo12g3420 12 123390756 123392573 Amo16g2069 16 70196004 70199270 PCT
Amo12g3420 12 123390756 123392573 Amo06g1461 06 42045433 42048063 PCT