Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2012 ATGTCTGGCCCTGTGGCCATAGTTGCTGATCATTTGGATGGAGGAGCAGTTTCTTGTGCTGACAGAACCAAATCTCTTGATGCCATTTACGAATCGGATCACTTATCTATATGGACGAATGGTGAAGCTGATCATTCCTCTGAAATCGTTGGGTTTCGAGTTGGAGAACTCTTGCTTCCTAATGGAGAAACATATTGTGGTTCACTTCTTGGCAATATGCCCGAGGGCCATGGTGTGTATGTCTGGTCCGATGGATGCGTCTACGAGGGCGAATGGAGACGGGGTATGAGAAATGGTATTGGGAAAATTAGATGGCCTTCTGGAGCAGTGTATGAGGGTGAATTCTCTGGTGGATATGTCCATGGTACCGGAACATATATTGGTTCGGATAAGTTGACCTATAAAGGGCGGTGGAGATTGAATCTTAAGCACGGTCTTGGTTACCAAGTTTATCCGGATGGAGATATCTTTGAAGGCTCTTGGATAAGAGGTACACCAGAGGGGCCTGGGAAGTATACATGGGCAAATGGGAATGTATATTTGGGGAATATGAAAGGCGGGACCATGTCGGGGAAAGGAACTCTAACATGGATAACCGGGGATTCATTTGAAGGAAATTGGTTGAATGGCATGATGCATGGGTTTGGAGTATACACTTGGAGTGATGGAGGCTGCTATGTTGGGACTTGGTCACTCGGTCTAAAAGATGGTAAAGGAACTTTTTATCCTAAAGGCAGCGGTCTTCCATCCGTTCAAGAAATCTACCTCAAAGCTTTGCGAAAAAGAGGGCTTTTGCCGGATTTGAGAAAGCAGAGCCAGGTTGGAGATGTCAAGCTTCGTGAGAATCAGAGATCCAGTCGTGTTTCGTCTCATAAACTTGCAAAGGGAAACCTGTTAAATCTGGACCAGTCTAGTAGAACAAATGTTTCTCTTGAAAGGCGTTGGAGTCTTGAGGTATCAATTGAGAAAGTGATTGGACATGATTCTGCATTCGACATAACAGACTCTTTACCAGAAAGTGGAAATAAAGAGATTATTTCGAAGATCCCAATCTTGGAACGAGAGTACATGCAAGGCGTATTAATAAGTGAAGTAGTGTTGAATGATATGTTTACATCCATGTCTAGAAGGGCTAGGCGTCGACAAAGAAAGCTTGCAAGAGAGATAAAAAGACCTGGTGAAGCAATCATCAAAGGTCACAGGAGTTATGATCTGATGCTCAGTTTGCAACTTGGAATAAGGTATACTGTGGGCAAGATTACGCCTGTAAAGAGTAGAGAAGTGCGAGCGTCGGATTTTGGTAGCAAAGCAAGCTTTTGGATGAATTTTCCAAAAGAAGGTTCTCAATTAACCCCTCCGCATCAGTCAGATGATTTTAGATGGAAAGATTACTGCCCAATGGTGTTTAGAAATTTAAGAGAGTTGTTCAAGATTGATGCTGCTGATTACATGATGTCTATCTGTGGAAATGATGCTCTGAGGGAACTATCTTCTCCGGGGAAAAGTGGTAGTGTCTTTTTCCTATCTCAGGATGATCGTTTCATGATCAAGACGCTGCGGAGATCTGAAGTCAAGGTTCTTCTGAGAATGCTTCCAGACTATCATCATCATGTGAAGTCATATGAAAATACACTCATTACAAAATTTTTTGGCCTGCACAGAATTAAACCTTCAAGTGGTCAAAAGTTTCGCTTTGTTGTAATGGGAAATATGTTCTGCACAGAATTAAGGATTCATAGGAGATTTGATTTGAAAGGTTCTTCCCTTGGACGGTCATCAGACAAGATAGAAATTGATGAGAATACCACTCTTAAAGATTTAGATTTGAACTACTGCTTCTACTTGGAACCATCTTGGAGGGAGTCTTTACTAAAGCAGATTGAAATAGACAGCAGGTTTTTGGAAGCACAGCACATTATGGATTACAGCCTCCTTCTAGGGGTTCATTATCGAGCTCCCGAGCAGCTGCGCCCACTCACGTCATACAGCCACCGGATGAGTGTGGATGGATTGGCAATGCTTGCGGAGGAAGACCCTCTGGAGGACGAAGTATATAACTATCCACAAGGCCTTGTTCTTGTTCCTCGAGGATCAGATGATGACAGCGTCGTTGTAGGCTCGCACATTAGAGGTAGCAGGTTAAGAGCTTCATCTGCTAATGATGAGGAGGTAGATCTTCTTCTACCTGGTACAGCAAGGCTCCAAATCCAGCTTGGTGTGAACATGCCCTCGAGGGCAGAGCAGATTCCAGGAAAACAGGACAAACAAATGTTCCATGAGGTATATGACGTTGTAGTGTACCTCGGTATCATCGACATACTGCAAGACTACAACATGACTAAGAAGATTGAACATGCCTATAAATCTCTCCAGTTTGATTCATTGTCTATCTCGGCCGTCGACCCTACATTCTACTCGCGTCGCTTCCTGGAATTTATTCAGAAAGTGTTCCCGCAAAACTCGGTTTCAGGTTAA 2475 0.4347 MSGPVAIVADHLDGGAVSCADRTKSLDAIYESDHLSIWTNGEADHSSEIVGFRVGELLLPNGETYCGSLLGNMPEGHGVYVWSDGCVYEGEWRRGMRNGIGKIRWPSGAVYEGEFSGGYVHGTGTYIGSDKLTYKGRWRLNLKHGLGYQVYPDGDIFEGSWIRGTPEGPGKYTWANGNVYLGNMKGGTMSGKGTLTWITGDSFEGNWLNGMMHGFGVYTWSDGGCYVGTWSLGLKDGKGTFYPKGSGLPSVQEIYLKALRKRGLLPDLRKQSQVGDVKLRENQRSSRVSSHKLAKGNLLNLDQSSRTNVSLERRWSLEVSIEKVIGHDSAFDITDSLPESGNKEIISKIPILEREYMQGVLISEVVLNDMFTSMSRRARRRQRKLAREIKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPVKSREVRASDFGSKASFWMNFPKEGSQLTPPHQSDDFRWKDYCPMVFRNLRELFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRRSEVKVLLRMLPDYHHHVKSYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSSDKIEIDENTTLKDLDLNYCFYLEPSWRESLLKQIEIDSRFLEAQHIMDYSLLLGVHYRAPEQLRPLTSYSHRMSVDGLAMLAEEDPLEDEVYNYPQGLVLVPRGSDDDSVVVGSHIRGSRLRASSANDEEVDLLLPGTARLQIQLGVNMPSRAEQIPGKQDKQMFHEVYDVVVYLGIIDILQDYNMTKKIEHAYKSLQFDSLSISAVDPTFYSRRFLEFIQKVFPQNSVSG* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2012 824 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 399 817 IPR002498 GO:0016307|GO:0046488
Amo16g2012 824 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 488 815 IPR002498 GO:0016307|GO:0046488
Amo16g2012 824 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 16 822 - -
Amo16g2012 824 CDD PIPKc_AtPIP5K_like 402 816 - -
Amo16g2012 824 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 388 570 IPR027484 -
Amo16g2012 824 SUPERFAMILY SAICAR synthase-like 398 817 - -
Amo16g2012 824 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 16 822 IPR023610 -
Amo16g2012 824 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 174 244 - -
Amo16g2012 824 Pfam MORN repeat 203 224 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 88 109 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 180 201 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 134 155 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 157 179 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 65 87 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 111 130 IPR003409 -
Amo16g2012 824 Pfam MORN repeat 226 246 IPR003409 -
Amo16g2012 824 SMART PIPK_2 429 818 IPR002498 GO:0016307|GO:0046488
Amo16g2012 824 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 60 187 - -
Amo16g2012 824 Gene3D - 163 208 - -
Amo16g2012 824 Gene3D - 118 162 - -
Amo16g2012 824 Gene3D - 67 117 - -
Amo16g2012 824 Gene3D - 209 249 - -
Amo16g2012 824 SMART morn 155 176 IPR003409 -
Amo16g2012 824 SMART morn 132 153 IPR003409 -
Amo16g2012 824 SMART morn 224 245 IPR003409 -
Amo16g2012 824 SMART morn 178 199 IPR003409 -
Amo16g2012 824 SMART morn 86 107 IPR003409 -
Amo16g2012 824 SMART morn 109 130 IPR003409 -
Amo16g2012 824 SMART morn 201 222 IPR003409 -
Amo16g2012 824 SMART morn 63 84 IPR003409 -
Amo16g2012 824 PIRSF PIP5K_plant 10 821 IPR017163 GO:0005524|GO:0016308
Amo16g2012 824 Gene3D - 571 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2012 Amo-Chr16 63303638 63308969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2012 15 823 Acyl Lipid Metabolism Gene Families AT3G09920 73.522 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2012 K00889 - gmx:100805371 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2012 16 63303638 63308969 Amo12g3409 12 123246064 123251023 PCT
Amo12g3409 12 123246064 123251023 Amo16g2012 16 63303638 63308969 PCT