Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3409 ATGTCTGGCCCTGTGGCCACAGTTGATAATTTGGATGGAGCAGTTATCTCTGCAGAGAGAACAAAGTCTCTTGATGCCATTTCCGAGGTAGACGTGTCGTCCTTATTGAGAAACGGCGAAAGCAGTGGTCATTCATCTGAGATAGTTGGGTTTAGAGTTGGGGAACTCTTGCTTCCTAATGGAGAGTCATATTCCGGGTCCCTTCTCGGCAACATGCCGGAGGGTAGGGGTAAGTATGTATGGTCAGATGGATGTGTATATGATGGTGAGTGGAGAAGGGGGATGAGGAATGGAAATGGAAGGTTACAATGGCCTTCTGGCACGGTTTATGAGGGCGAATTCTCCGGTGGCTATATCCATGGTACAGGAACATATATTGGTTCGGATAGTCTTACCTACAAAGGGCGGTGGCGATTGAATCTTAAGCATGGACTTGGTTATCAAGTTTATCCTAATGGAGACATCTTTGAAGGGTCTTGGATCCAAGGAACGCCGGAGGGGCCGGGGAAGTATACTTGGGCGAATGGGAATGTGTATTTAGGGAATATGAAAGGTGGGAAAATGTCAGGGAAAGGAACTTTGACATGGATCAATGGAGACTCATTTGAAGGAAGCTGGTTGGATGGTATGATGCATGGTCTTGGAGTTTATACTTGGAGTGACGGCGGCTGCTATGTTGGGACCTGGACGAGAGGTTTGAAAGACGGCAAAGGAACGTTTTATCCGAAAGGTAGCTGTCTTCCGTCGGCACAAGAGGTTTATCTGAATGCCTTGAGGAAAAGAGGACTATTGCCGGATTTGAGGAGGCAGAAACAGGCTCATATTCATCATGCTTCTTCGGTTGATATGGGAAATGTCAAGGTCAGTGGTGATAATCAGAGTTCTAGCCTTGTTTCGTCCGATAAGCTTGCCAAAGGGAGTCTATTAAACATTGAACAATCGCGCAGCAAGAATATCTCTCTCGAAAGGCGATGGAGTCTTGAGGTGTCTATTGAGAAAGTAATAGCCCATGATTCAACAGATTCTATATTGGAAGGTAGTGAAAAGATCCCCATTTTGGAGCGCGAGTATATGCAAGGTGTATTAATAAGTGAGGTAGTTTTAAATAACAGCTTTTCGAATTTGTCTAGAAGGGCAAAACGGCTGCAGAAGAAGCTCGCCAGAGAGATTAAAAGACCCGGTGAAGCCATCATTAAAGGTCACCGGAGCTATGATCTGATGCTTAGTCTGCAGCTTGGAATAAGGTATACTGTGGGAAAGATTACCCCGATACAGAGGCGAGAAGTTCGAGCATCGGATTTCGGTCCTAGAGCAAGTTTTTGGATGAATTTTCCTAAAGAAGGTTCTCAGCTAACTCCTCCTCATCAATCTGATGACTTCAAATGGAAAGATTATTGCCCAATGGTGTTCAGAAACTTGAGAGAGTTGTTCAAGATTGATGCTGCTGACTATATGATGTCGATTTGCGGAAATGATGCTCTGAGGGAACTATCATCTCCGGGGAAAAGTGGTAGTGTCTTTTTCCTGTCTCAGGATGATCGTTTCATGATCAAGACGCTTCGAAGATCTGAAGTAAAGGTTCTTCTAAGAATGCTTCCGGACTATCATCATCACGTGAAGTCATACGATAATACCCTCATCACGAAATTCTTCGGTCTGCACCGGATTATACCTTCGAGTGGTCAAAAGTTTCGCTTTGTTGTGATGGGAAATATGTTTTGTACAGAGCTAAGGATCCATAGGAGATTCGATTTGAAAGGTTCATCCCTCGGACGCTCTTCGGACAAGATAGAAATCGATGAGAATACAACTTTGAAAGATTTGGATCTCAACTACTGCTTCTATTTGGAACCTTCTTGGCGCCAGTCTTTGCTAAAGCAGATTGAGATCGACAGCAAGTTCTTGGAAGCACAGCATATAATGGATTACAGCCTTCTACTCGGCGTTCATTATCGAGCTCCACAGCATCTCCGTCCTCTCACATCATACAACCGTAGCATAACTGCTGATGGATTAGCAAGTCTTGCTGAGGAAGATCCTCTAGAGGATGAAGTATCAAGCTATCCCCAAAGCCTTGTTTTGGTCCCTAGGGGATCAGATGATAACAGTGTTGTTGTAGGATCACACATCAGAGGTAGTCGACTGCGCGCTTCGGCTGCCGGCGATGAGGAGGTGGATCTGCTTCTTCCAGGCACAGCAAGACTACAAATCCAGTTAGGAGTAAACATGCCAGCAAGGGCAGAGCAAATTCCAGGAAAGGAAGAGATGCAAACATTTCATGAAGCTTATGATGTGGTGCTCTACCTGGGCATAATTGACATTTTACAGGACTACAACATGTCCAAGAAAATTGAACATGCCTACAAATCGATTCAGTTCGATTCGATTTCAATCTCGGCCGTTGATCCCGGATTCTACTCCCGTCGCTTCTTGGACTTCATTCAGAAAGTGTTCCCACCAAATGAAACTCTAGCTGGTTGA 2481 0.4486 MSGPVATVDNLDGAVISAERTKSLDAISEVDVSSLLRNGESSGHSSEIVGFRVGELLLPNGESYSGSLLGNMPEGRGKYVWSDGCVYDGEWRRGMRNGNGRLQWPSGTVYEGEFSGGYIHGTGTYIGSDSLTYKGRWRLNLKHGLGYQVYPNGDIFEGSWIQGTPEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWINGDSFEGSWLDGMMHGLGVYTWSDGGCYVGTWTRGLKDGKGTFYPKGSCLPSAQEVYLNALRKRGLLPDLRRQKQAHIHHASSVDMGNVKVSGDNQSSSLVSSDKLAKGSLLNIEQSRSKNISLERRWSLEVSIEKVIAHDSTDSILEGSEKIPILEREYMQGVLISEVVLNNSFSNLSRRAKRLQKKLAREIKRPGEAIIKGHRSYDLMLSLQLGIRYTVGKITPIQRREVRASDFGPRASFWMNFPKEGSQLTPPHQSDDFKWKDYCPMVFRNLRELFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMIKTLRRSEVKVLLRMLPDYHHHVKSYDNTLITKFFGLHRIIPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSSDKIEIDENTTLKDLDLNYCFYLEPSWRQSLLKQIEIDSKFLEAQHIMDYSLLLGVHYRAPQHLRPLTSYNRSITADGLASLAEEDPLEDEVSSYPQSLVLVPRGSDDNSVVVGSHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNMPARAEQIPGKEEMQTFHEAYDVVLYLGIIDILQDYNMSKKIEHAYKSIQFDSISISAVDPGFYSRRFLDFIQKVFPPNETLAG* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3409 826 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 389 571 IPR027484 -
Amo12g3409 826 SMART morn 85 106 IPR003409 -
Amo12g3409 826 SMART morn 200 221 IPR003409 -
Amo12g3409 826 SMART morn 62 83 IPR003409 -
Amo12g3409 826 SMART morn 131 152 IPR003409 -
Amo12g3409 826 SMART morn 108 129 IPR003409 -
Amo12g3409 826 SMART morn 154 175 IPR003409 -
Amo12g3409 826 SMART morn 177 198 IPR003409 -
Amo12g3409 826 SMART morn 223 244 IPR003409 -
Amo12g3409 826 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 175 245 - -
Amo12g3409 826 CDD PIPKc_AtPIP5K_like 403 817 - -
Amo12g3409 826 Gene3D - 66 115 - -
Amo12g3409 826 Gene3D - 116 162 - -
Amo12g3409 826 Gene3D - 163 207 - -
Amo12g3409 826 Gene3D - 208 249 - -
Amo12g3409 826 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 489 816 IPR002498 GO:0016307|GO:0046488
Amo12g3409 826 SUPERFAMILY SAICAR synthase-like 399 818 - -
Amo12g3409 826 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 14 821 - -
Amo12g3409 826 Gene3D - 572 818 - -
Amo12g3409 826 PIRSF PIP5K_plant 5 822 IPR017163 GO:0005524|GO:0016308
Amo12g3409 826 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 400 818 IPR002498 GO:0016307|GO:0046488
Amo12g3409 826 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 59 186 - -
Amo12g3409 826 SMART PIPK_2 430 819 IPR002498 GO:0016307|GO:0046488
Amo12g3409 826 Coils Coil 372 392 - -
Amo12g3409 826 Pfam MORN repeat 179 200 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 225 245 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 87 109 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 64 86 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 202 223 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 156 178 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 133 154 IPR003409 -
Amo12g3409 826 Pfam MORN repeat 110 129 IPR003409 -
Amo12g3409 826 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 14 821 IPR023610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3409 Amo-Chr12 123246064 123251023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3409 10 821 Acyl Lipid Metabolism Gene Families AT3G09920 74.727 0.0 1272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3409 K00889 - gmx:100805371 1484.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3409 12 123246064 123251023 Amo12g3409 12 123246064 123251023 ECH
Amo16g2012 16 63303638 63308969 Amo12g3409 12 123246064 123251023 PCT
Amo12g3409 12 123246064 123251023 Amo16g2012 16 63303638 63308969 PCT