Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1959 ATGTTCAATAGAATCATGAAGAGAGGGCCGAAAAAGCCCTCCAAATCAGATGACTTCGGTGCTCCCGACGGCAATCCATTGCCTAACGCCGCCGGCGTCGTCGTCAACCATGCTTCTCGCGGCGGAGCTGCCCCTCCTGCCGGCGCTGCCGTGGCGCTGACGATGCCTCCGCCTTCCGGCACTATTGAACCGTTGCCCCCGTTCCGAGACGTGCCGGTCTCGGAGCGGCAGACCTTGTTCCTCCGGAAGCTCCAGAATTGCTGCTTCTTGTTGGACTTCTCCGACACATTGAAGAACGTTCGGGAGAAGGAGATCAAGCGGCAAACGCTGATGGAGCTCGTAGATTTTATCCAATCGGGTTCTGGAAAGATCACAGAGAATTGCCAGGAGGAGATGATAAAGATGATATCGGTTAACATTTTCCGGTGCCTTCCACCGGCGTCGCACGAGAACACCGGGGCAGAGAACAACGACCCAGAGGAGGAGGAGCCCTCTATGGACGCGGCCTGGCCGCACTTGCAGCTCGTCTACGAACTTCTCCTTCGGTACGTGGTTTCTTCTGATACTGATACCAAGGTTGCGAAACGGTACATTGATCATTCATTCGTGCTTAAGTTACTTGATTTGTTTGGTTCCGAGGACCCTAGAGAGCGTGAGTATTTGAAAACAATATTGCATCGTATATATGGGAAATTCATGGTTCACAGGCCCTTCATTAGGAAGGCGATTAACAACATTTTTTATCGTTTTATATATGAGACTGAGAGACATAGTGGTATTGGGGAGCTTCTGGAGATCCTTGGCAGCATCATTAATGGGTTTGCGCTGCCCATGAAGGAGGAACACAAGTTGTTCCTTGTTAGGGCGCTTTTGCCCCTACATAAGCCTAAGTCTGTTGGCATGTACCATCAGCAGTTGTCGTACTGTATCTTGCAGTTTGTTGAGAAGGATTTCAAGCTCGCGGATACGGTTATTAGGGGCCTGTTGAAGTATTGGCCTGTCACGAATTGCCAGAAGGAGGTTCTCTTCCTTGGGGAATTGGAGGAGGTGTTGGAGGCCACACAGGCTGCGGAGTTCCAACGCTGCATGGTTCCCCTCTTTAGACAGATTTCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAGCCCTCTTCCTCTGGAATAATGAGCATATTGTCAGCTTAATTGCTCAAAACAGGACTGTAGTGCTACCCATAATATATGAAGCATTGGAGAAAAATATCAAGTGTCATTGGAACCAGGCAGTTCATGGGTTGACGGTGAATGTTCGGAAGATGTTTGTTGAAATGGACGCTGAATTGGTTGAGGAGTGCCAGAGGCAGCATGCAGAGAGAGAGGCTAAAGCCCATGAAGTGGAGCAGCAGCGAGAATTGAACTGGAAAAAATTGGCAGAGGCAGCTGCCCAGAACGGACCACTGGATATGGTCACAGTTTAG 1464 0.5007 MFNRIMKRGPKKPSKSDDFGAPDGNPLPNAAGVVVNHASRGGAAPPAGAAVALTMPPPSGTIEPLPPFRDVPVSERQTLFLRKLQNCCFLLDFSDTLKNVREKEIKRQTLMELVDFIQSGSGKITENCQEEMIKMISVNIFRCLPPASHENTGAENNDPEEEEPSMDAAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFGSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSVGMYHQQLSYCILQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQISRCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIYEALEKNIKCHWNQAVHGLTVNVRKMFVEMDAELVEECQRQHAEREAKAHEVEQQRELNWKKLAEAAAQNGPLDMVTV* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1959 487 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 479 - -
Amo16g1959 487 SUPERFAMILY ARM repeat 77 458 IPR016024 -
Amo16g1959 487 MobiDBLite consensus disorder prediction 1 25 - -
Amo16g1959 487 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 65 476 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo16g1959 487 Coils Coil 444 464 - -
Amo16g1959 487 PIRSF PP2A_B56 53 485 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo16g1959 487 Gene3D - 72 475 IPR011989 -
Amo16g1959 487 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 479 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1959 Amo-Chr16 55745945 55750453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1959 K11584 - gmx:100798308 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1959 16 55745945 55750453 Amo16g1959 16 55745945 55750453 ECH
Amo16g1959 16 55745945 55750453 Amo12g3404 12 123213795 123218023 PCT
Amo12g3404 12 123213795 123218023 Amo16g1959 16 55745945 55750453 PCT