Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3404 ATGTTGAAGAAATTCATGGGAGGAGGGAACAAGAAGCCCTCCAAGTCCGACTCCGCCGATGCTATCGCCGGCACCGGCAACAATGTCGTCGTCAACCACGCCTCCCGTGGAGCTTTACCTGCGCCGGCGCCAAATTCCGCTGGAATACCGTCTGCTCCGCCTCCACCGTCTGGTGTCATGGAGGTCCTGCCGGCGTTCCGCGACGTTCCGGTGGGGGAACGGCAGAATCTGTTCCTCCGTAAGCTTCAGGTTTGTTGCTTCGTCCTCAACTTCTCCGACACGCTGAAGAACGTTAGAGAGAAGGAGATCAAGCGGCAAACGCTGATGGAGCTCGTTGAGTTCATCCAATCTGGCTGCGGAAAATTATCGGAGAATTGCCAAGAAGAAATGATTCGAATGATTTCGGTTAACATTTTCCGGTGCCTCCCTCCGGCGTCGTACGAGAACACCGGGCAAGAAGCCACCGACCCCGAGGAGGAGGAGCCTTCTATGGATCCCGCCTGGCCTCACTTGCAACTTGTTTACGAGCTTCTCCTGCGATACGTTGTTTCTTCAGACACCGATACGAAGGTTGCGAAACGGTACATTGATCACTCTTTCGTGTTGAAATTGCTTGATTTGTTTGACACAGAGGACCCTAGGGAGCGTGAGTATCTGAAAACTATACTTCACCGTATATATGGAAAATTCATGGTTCATAGACCGTTTATTAGGAAGGCGATTAATAATATATTCTATCGGTTTATATATGAGACTGAGAGGCATAGTGGAATTGGTGAGCTTTTGGAGATTCTTGGTAGTATTATTAATGGATTTGCGTTGCCAATGAAGGAGGAGCATAAGTTGTTCCTTGTGAGGGCTTTGTTGCCTTTGCATAAGCCTAAGTCGCTCGCCATGTACCAGCAGCAGTTGTCTTACTGCATTACTCAGTTTGTTGAGAAGGATTTCAAGCTTGCAGATACCGTTATTAGGGGCTTGCTCAAGTACTGGCCTGTTACCAATTGCCAGAAGGAGGTTCTCTTCCTTGGAGAACTCGAGGAAGTGCTCGAGGCCACGCAGCCTGCCGAGTTCCAGCGCTGCATGGTTCCCCTTTTTAGACAGATTTCCCGCTGCCTCAATAGCTCTCACTTTCAGGTTGCCGAGCGGGCTCTCTTTTTGTGGAATAATGAGCACATCGTGAGCTTAATTGCCCAAAACAGAGCCGTAATATTACCAATATTATTTCATGCACTTGAGAAAAATATATCGAGTCATTGGAACCAGGCTGTTCACGGGCTTACTATGAATGTTCGCAAGATGTTTTTGGAAATGGACGCTGAGTTGTTCGAACAATGTCAGAGACAACATGCAGAGAAAGAGGCTAACGCGAAAGATGTTGAAGAGCAGAGGGAACTAAATTGGAAGAGAATAGCAGATGCTGCCGCACAAAATGGGGTGGATGATATGGTCACAGATTAG 1458 0.4835 MLKKFMGGGNKKPSKSDSADAIAGTGNNVVVNHASRGALPAPAPNSAGIPSAPPPPSGVMEVLPAFRDVPVGERQNLFLRKLQVCCFVLNFSDTLKNVREKEIKRQTLMELVEFIQSGCGKLSENCQEEMIRMISVNIFRCLPPASYENTGQEATDPEEEEPSMDPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDTEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALLPLHKPKSLAMYQQQLSYCITQFVEKDFKLADTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQPAEFQRCMVPLFRQISRCLNSSHFQVAERALFLWNNEHIVSLIAQNRAVILPILFHALEKNISSHWNQAVHGLTMNVRKMFLEMDAELFEQCQRQHAEKEANAKDVEEQRELNWKRIADAAAQNGVDDMVTD* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3404 485 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 479 - -
Amo12g3404 485 SUPERFAMILY ARM repeat 75 456 IPR016024 -
Amo12g3404 485 Gene3D - 70 473 IPR011989 -
Amo12g3404 485 PIRSF PP2A_B56 13 484 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo12g3404 485 Coils Coil 442 462 - -
Amo12g3404 485 MobiDBLite consensus disorder prediction 1 22 - -
Amo12g3404 485 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 479 IPR002554 GO:0000159|GO:0007165|GO:0019888
Amo12g3404 485 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 63 474 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3404 Amo-Chr12 123213795 123218023 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3404 K11584 - gmx:100814538 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3404 12 123213795 123218023 Amo12g3404 12 123213795 123218023 ECH
Amo16g1959 16 55745945 55750453 Amo12g3404 12 123213795 123218023 PCT
Amo12g3404 12 123213795 123218023 Amo16g1959 16 55745945 55750453 PCT