Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1695 ATGGGGCTACACCCGAACCCCACGGCCCCAGCACCACCACCACCCAACTCCCTCGTCTTCTCCAACTCCGGCAAGTCCCTCGTCGTCTCCGCCTCCGGCTCGCGCTTCGATCCGAGGAAGAAGTATGTTAGGCAGGTKACCGGCCGGCACAATGACACCGAGCTCCACCTCGCTGCCCAGCGCGGCGATGTTACTGCCGTTCGACGAATCCTTGCCGAGATCGATGATCAGATGACGGGAACCCTAAGCGGAGCTGAGTTTGATGCTGAGGTGGTGGAGATTAGGTCCGCGATCGTCAACGAAGTCAACGAATTGGGAGAGACGCCGCTGTTCACGGCCGCCGATAAGGGACACCTGGATGTCGTTAAAGAGCTTCTCCCTCACACCACCAAAGAGGCCCTTTCGTTCAAGAACCGTGCCGGCTTCTCTCCCTTGCACATTGCCGCTAAACAAGGTCATAAAGACATTGTAGAGGTGCTTCTAGACCATGATCCGGAGCTAAGCAAGACCTTTGGCCAATCAAATGCAACCCCTCTTGTCACTGCAGCTATGAAGGATCAAGCGGATGTTGTTGAGCTGTTGCTTAACAGAGATCCTAGCTTGTTGGAGATAGCTAAGTCCAATGGGAAGAACGCACTCCATTTATCTGGTCGGCAAGGGCACGTTGCTGTGGTGAAACTGTTGCTGGCCCATGATCCGCAACTCGCTCGGAGGACCGATAAGAAAGGACAAACTGCTCTGCACATGGCTGTGAAGGGGACTAGCTGTGAAGTGGTGAAGATGATTCTTAATGCAGATCCTGCAATAGTCATGTTGCCTAACAAGTTTGGAAACAATGCATTGCATATAGCCACCAGGAAGAAAAGGGTAGAGATAGTGAATGAACTGTTACTTCATCCTGACACCAATGTGAATGCCCTATCAAGAGACCAGAAAACYGCTCTTGACATTGCTGAAGGACTTCCAGTGTCCGAAGAATCCTGGGAGATAAAAGACTGCCTTGTCCGTTTTGGTGCATGTAAATCCAGTGACCTCAAGCAACCAAGGGACGAGCTGAGGAAAACTATGACACAGATCAAAATGGACAAGTTGCACCAAAGCGGAATCCATAATGCCACAAATTCAGTAACCGTTGTGGCCTCGCTGTTTGCAACGGTTGCATTTGCAGCAATCTTCACTGTTCCTGGTGGTGATGATGATTCGGGCAAGGCCGTGGTGGTGCACACTGCGTCCTTCAAGGCCTTCTTCATATCCAATGCTATTTCGCTCTTTGTTTCACTGGTTGTTGTGGTGGTTCAGATCACGGTTGTTAGAGGGGAGACAAAGTCCGAAAGAAGAGTTACAGAAATTATCAATAAGATGCTGTGGTTGGCTTCAGTTTGCACCTCTGTTTCATTCATGGCGGCGTCTTATATAGTTGTTGGTCGCCGCAGCAGGTGGGCTGCAATCCTTATTACAGTCATAGGGACTMTTGTAACYGTTGCCGTTCTTGGRACCATGACTTACTTTGTGCTGAAATCCAAACGTCTCCGAAGAGAAAGGAAGAAGTTCAAAAGGATTAAAACATCTTCTTGGCGGTGTTCAGATTCTGAAACTGAAGTGGATCCAATTTAR 1614 0.4957 MGLHPNPTAPAPPPPNSLVFSNSGKSLVVSASGSRFDPRKKYVRQVTGRHNDTELHLAAQRGDVTAVRRILAEIDDQMTGTLSGAEFDAEVVEIRSAIVNEVNELGETPLFTAADKGHLDVVKELLPHTTKEALSFKNRAGFSPLHIAAKQGHKDIVEVLLDHDPELSKTFGQSNATPLVTAAMKDQADVVELLLNRDPSLLEIAKSNGKNALHLSGRQGHVAVVKLLLAHDPQLARRTDKKGQTALHMAVKGTSCEVVKMILNADPAIVMLPNKFGNNALHIATRKKRVEIVNELLLHPDTNVNALSRDQKTALDIAEGLPVSEESWEIKDCLVRFGACKSSDLKQPRDELRKTMTQIKMDKLHQSGIHNATNSVTVVASLFATVAFAAIFTVPGGDDDSGKAVVVHTASFKAFFISNAISLFVSLVVVVVQITVVRGETKSERRVTEIINKMLWLASVCTSVSFMAASYIVVGRRSRWAAILITVIGTXVTVAVLGTMTYFVLKSKRLRRERKKFKRIKTSSWRCSDSETEVDPI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1695 537 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 361 532 - -
Amo16g1695 537 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 23 362 - -
Amo16g1695 537 SMART ANK_2a 208 237 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 276 306 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 140 169 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 242 271 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 174 203 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 50 79 IPR002110 GO:0005515
Amo16g1695 537 SMART ANK_2a 105 133 IPR002110 GO:0005515
Amo16g1695 537 ProSiteProfiles Ankyrin repeat profile. 140 168 IPR002110 GO:0005515
Amo16g1695 537 PANTHER CASKIN 361 532 - -
Amo16g1695 537 PANTHER CASKIN 23 362 - -
Amo16g1695 537 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Amo16g1695 537 ProSiteProfiles Ankyrin repeat region circular profile. 140 168 - -
Amo16g1695 537 Gene3D - 204 385 IPR036770 -
Amo16g1695 537 Pfam Ankyrin repeats (3 copies) 55 166 IPR002110 GO:0005515
Amo16g1695 537 Pfam Ankyrin repeats (3 copies) 181 267 IPR002110 GO:0005515
Amo16g1695 537 ProSiteProfiles Ankyrin repeat profile. 276 309 IPR002110 GO:0005515
Amo16g1695 537 MobiDBLite consensus disorder prediction 1 22 - -
Amo16g1695 537 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g1695 537 ProSiteProfiles Ankyrin repeat profile. 105 126 IPR002110 GO:0005515
Amo16g1695 537 SUPERFAMILY Ankyrin repeat 55 321 IPR036770 -
Amo16g1695 537 Pfam Ankyrin repeat 277 307 IPR002110 GO:0005515
Amo16g1695 537 Gene3D - 25 203 IPR036770 -
Amo16g1695 537 Pfam Domain of unknown function 368 473 IPR026961 -
Amo16g1695 537 ProSiteProfiles Ankyrin repeat region circular profile. 208 229 - -
Amo16g1695 537 ProSiteProfiles Ankyrin repeat region circular profile. 105 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1695 Amo-Chr16 33800990 33804142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1695 2 537 Miscellaneous Gene Families AT3G09550 63.032 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1695 - - oeu:111403140 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1695 16 33800990 33804142 Amo06g1032 06 15066461 15070108 hybridization