Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1032 ATGGACCGCTACCCCTACTCCGAGCCCACCACCCCTGCCTCTTCCGTCCCGAGGGAAACCCTCTTTGTCTCCAACTCCAGCAACTCCCTCGTCTTCTCCAACTCCGGCAAGTCCCTCGTCGTCTCCGCCTCCGGCTCGCGCTTCGATCCGAGGAAGAAGTATGTTAGGCAGGTMACCGGCCGGCACAATGACACCGAGCTCCACCTCGCTGCCCAGCGCGGCGATGTTACTGCCGTTCGACGAATCCTTGCCGAGATCGATGATCAGATGACGGGAACCCTAAGCGGAGCTGAGTTTGATGCTGAGGTGGTGGAGATTAGGTCCGCGATCGTCAACGAAGTCAACGAATTGGGAGAGACGCCGCTGTTCACGGCCGCCGATAAGGGACACCTGGATGTCGTTAAAGAGCTTCTCCCTCACACCACCAAAGAGGCCCTTTCGTTCAAGAACCGTGCCGGCTTCTCTCCCTTGCACATTGCCGCTAAACAAGGTCATAAAGACATTGTAGAGGTGCTTCTAGACCATGATCCGGAGCTAAGCAAGACCTTTGGCCAATCAAATGCAACCCCTCTTGTCACTGCAGCTATGAAGGATCAAGCGGATGTTGTTGAGCTGTTGCTTAACAGAGATCCTAGCTTGTTGGAGATAGCTAAGTCCAATGGGAAGAACGCACTCCATTTATCTGGTCGGCAAGGGCACGTTGCTGTGGTGAAACTGTTGCTGGCCCATGATCCGCAACTCGCTCGGAGGACCGATAAGAAAGGACAAACTGCTTTGCACATGGCTGTGAAGGGGACTAGCTGTGAAGTGGTGAAGATGATTCTTAATGCAGATCCTGCAATAGTCATGTTGCCTAACAAGTTTGGAAACAATGCATTGCATATAGCCACCAGGAAGAAAAGGGTAGAGATAGTGAATGAACTGTTACTTCATCCTGACACCAATGTGAATGCCCTATCAAGAGACCAGAAAACRGCTCTTGACATTGCTGAAGGACTTCCAGTGTCCGAAGAATCCTGGGAGATAAAAGACTGCCTTGTCCGTTTTGGTGCATGTAAATCCAGTGACCTCAAGCAACCAAGGGACGAGCTGAGGAAAACTATGACACAGATCAAAATGGACGTCTCCTGCCAGCTCGAACAAGCCCGGAGAACAAGCAGGAATGTAAGCGGGATTGCGAAGGAGCTGCAGAAGTTGCACCAAAGCGGAATCCATAATGCCACAAATTCAGTAACCGTTGTGGCCTCGCTGTTTGCAACGGTTGCATTTGCAGCAATCTTCACTGTTCCTGGTGGTGATGATGATTCGGGCAAGGCCGTGGTGGTGCACACTGCGTCCTTCAAGGCCTTCTTCATATCCAATGCTATTTCGCTCTTTGTTTCACTGGTTGTTGTGGTGGTTCAGATCACGGTTGTTAGAGGGGAGACAAAGTCCGAAAGGAGAGTTACAGAAATTATCAATAAGATGCTGTGGTTGGCTTCAGTTTGCACCTCTGTTTCATTCATGGCGGCGTCTTATATAGTTGTTGGTCGCCGCAGCAGGTGGGCTGCAATCCTTATTACAGTCATAGGGACTKTTGTAACRGTTGCCGTTCTTGGYACCATGACTTACTTTGTGCTGAAATCCAAACGTCTCCGAAGAGAAAGGAAGAAGTTCAAAAGGATTAAAACATCTTCTTGGCGGTGTTCAGATTCTGAAACTGAAGTGGATCCAATTTAYGCYATCTAG 1728 0.4994 MDRYPYSEPTTPASSVPRETLFVSNSSNSLVFSNSGKSLVVSASGSRFDPRKKYVRQVTGRHNDTELHLAAQRGDVTAVRRILAEIDDQMTGTLSGAEFDAEVVEIRSAIVNEVNELGETPLFTAADKGHLDVVKELLPHTTKEALSFKNRAGFSPLHIAAKQGHKDIVEVLLDHDPELSKTFGQSNATPLVTAAMKDQADVVELLLNRDPSLLEIAKSNGKNALHLSGRQGHVAVVKLLLAHDPQLARRTDKKGQTALHMAVKGTSCEVVKMILNADPAIVMLPNKFGNNALHIATRKKRVEIVNELLLHPDTNVNALSRDQKTALDIAEGLPVSEESWEIKDCLVRFGACKSSDLKQPRDELRKTMTQIKMDVSCQLEQARRTSRNVSGIAKELQKLHQSGIHNATNSVTVVASLFATVAFAAIFTVPGGDDDSGKAVVVHTASFKAFFISNAISLFVSLVVVVVQITVVRGETKSERRVTEIINKMLWLASVCTSVSFMAASYIVVGRRSRWAAILITVIGTXVTVAVLGTMTYFVLKSKRLRRERKKFKRIKTSSWRCSDSETEVDPIYAI* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1032 575 Pfam Ankyrin repeats (3 copies) 252 317 IPR002110 GO:0005515
Amo06g1032 575 Pfam Ankyrin repeats (3 copies) 67 178 IPR002110 GO:0005515
Amo06g1032 575 Pfam Ankyrin repeats (3 copies) 187 244 IPR002110 GO:0005515
Amo06g1032 575 ProSiteProfiles Ankyrin repeat profile. 117 138 IPR002110 GO:0005515
Amo06g1032 575 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 32 568 - -
Amo06g1032 575 Pfam Domain of unknown function 403 508 IPR026961 -
Amo06g1032 575 PANTHER CASKIN 32 568 - -
Amo06g1032 575 ProSiteProfiles Ankyrin repeat profile. 288 321 IPR002110 GO:0005515
Amo06g1032 575 ProSiteProfiles Ankyrin repeat profile. 152 180 IPR002110 GO:0005515
Amo06g1032 575 ProSiteProfiles Ankyrin repeat region circular profile. 220 241 - -
Amo06g1032 575 SUPERFAMILY Ankyrin repeat 67 333 IPR036770 -
Amo06g1032 575 ProSiteProfiles Ankyrin repeat region circular profile. 117 138 - -
Amo06g1032 575 SMART ANK_2a 254 283 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 220 249 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 152 181 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 288 318 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 62 91 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 117 145 IPR002110 GO:0005515
Amo06g1032 575 SMART ANK_2a 186 215 IPR002110 GO:0005515
Amo06g1032 575 Gene3D - 42 215 IPR036770 -
Amo06g1032 575 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Amo06g1032 575 Gene3D - 216 410 IPR036770 -
Amo06g1032 575 ProSiteProfiles Ankyrin repeat region circular profile. 152 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1032 Amo-Chr6 15066461 15070108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g1032 1 575 Miscellaneous Gene Families AT3G09550 65.936 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1032 - - gmx:100801840 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1695 16 33800990 33804142 Amo06g1032 06 15066461 15070108 hybridization