Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1542 ATGGAGGACGAAGCTGACATATACGACGGCGTTAGGGCTCAGTTTCCTCTCAGCTTCGGCAAGCAATCCAAGTCTCAGACCCCTCTCGAAGCCATCCACAACGCCACGCGTCGATCTAATACCAATCCTCCTCCTTCTTCTTCTTCTTCTTCGAAGCTTGCAACCGCAAGCGCTCTTCCTTCTCTCTCTTCTTCTTCTAAGGAATGGCTCAATTCCCTACGCTCCTCTAAAAACCCTACCCCTACTCTTGCTGATCGTGGTGGCGGTTCTGAGATTGGCCCGCCGCCACCTCCGCCTCCGACAGCAGAGGATGATAACGACGATGGCGCCATGGTGGGGCCGCCTCCTCCTCCACCTACCGGGGTGGGTTCGGGGGCGGATGAGGACGAAGACGACGATATGATTGGGCCGCCCCCGCCGCCGTCTGGTAACAATTTGARCTCCGACGACGACGATGATTCCAATGGAGATGAGTTGGGGAACCGGTTCCGTATTCCACTTAGCAACGAGATTGTCCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTAGATCACACTGGATCTAGAGTGCTTTCTGGAAGTTATGAYTACTCAGTGCGGATGTACGATTTTCAAGGAATGAATGCTCGTTTGCAATCGTTTCGACAACTGGAGCCCGCTGAAGGTCATCAAGTTCGCAACTTAAGCTGGAGTCCAACAGCAGATCGGTTTTTGTGTGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGCGATGGGCTTACTTTGGGAGAGTTTATGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACAATCTTAACATCATCAGAGGATGGATCACTGCGAATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTAATTAAACCAAAGCTTGCAAGGCCTGGAAGAGTTCCTGTAACCACATGTGCATGGGACCATGATGGTAAACGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGGTTTGGAGCATTAAGCCTGGGTGGGGGAGTAGGCCAGATATACATATTGAAAAAAGTCATTCAGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAATATCCTATTGTCAAGAAGCTTTGATGGTTCACTGAAGGTTTGGGATATGCGTAAAACAAAGGAAGCATTGAAGGTATTTGAGGATCTTCCAAATAATTACGGACAAACAAATATTGCATTCAGTCCTGGTGAGAATCTATTTTTTACTGGAACATCTGTTGAAAGAGAGAGCACAGTTGGGGGTTTATTGTGCTTCTTTGATAGAGCAAACCTTGAACTTGTTTCAAGAGTCGGCATATCCCCCTCTTGTAGTGTTGTTCGGTGTTGTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGTGATAAAAACCAAGGAGGGACTCACATACTATATGATCCCACCATCAGTGAAAGAGGAGCCCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCAATCGACGATTTTGAGGCAAAGCCTGTCATTCACAATCCCCATGCCTTACCACTGTTTAGAGATCAGCCAAGCCGTAAGCGTCAACGGGAGAAAGTATTAAAGGATCCATTGAAGTCCCACAAGCCTGAACTTCCCATAACAGGACCTGGCTTTGGTGGACGGGTCGGTGCAAGTCAAGGAAGCTTACTAACCCAGTATCTTATGAAGCAAGGAGGTATGATCAAGGAGACATGGATGGAGGAGGATCCAAGGGAAGCCATCTTGAAATATGCTGACGCAGCAGCAAARGATCCAAAATTCATTGCTCCAGCATATGCAGATACTCAACCTGAGCCAGTGTTCGCAAAGTCGGATTCYGAGGAAGAAGAAAAATGA 1935 0.4687 MEDEADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSNTNPPPSSSSSSKLATASALPSLSSSSKEWLNSLRSSKNPTPTLADRGGGSEIGPPPPPPPTAEDDNDDGAMVGPPPPPPTGVGSGADEDEDDDMIGPPPPPSGNNLXSDDDDDSNGDELGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYSVRMYDFQGMNARLQSFRQLEPAEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHDGKRIAGGIGDGSIQVWSIKPGWGSRPDIHIEKSHSDDITGLKFSSDGNILLSRSFDGSLKVWDMRKTKEALKVFEDLPNNYGQTNIAFSPGENLFFTGTSVERESTVGGLLCFFDRANLELVSRVGISPSCSVVRCCWHPKLNQIFATVGDKNQGGTHILYDPTISERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGASQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYADTQPEPVFAKSDSEEEEK* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 309 - -
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 410 IPR001680 GO:0005515
Amo16g1542 644 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Amo16g1542 644 Pfam WD domain, G-beta repeat 171 205 IPR001680 GO:0005515
Amo16g1542 644 Pfam WD domain, G-beta repeat 329 355 IPR001680 GO:0005515
Amo16g1542 644 Pfam WD domain, G-beta repeat 369 401 IPR001680 GO:0005515
Amo16g1542 644 MobiDBLite consensus disorder prediction 542 561 - -
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 207 - -
Amo16g1542 644 SUPERFAMILY WD40 repeat-like 159 490 IPR036322 GO:0005515
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 316 IPR001680 GO:0005515
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 357 IPR001680 GO:0005515
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 403 - -
Amo16g1542 644 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 3 644 - -
Amo16g1542 644 MobiDBLite consensus disorder prediction 18 83 - -
Amo16g1542 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Amo16g1542 644 Gene3D - 166 262 IPR015943 GO:0005515
Amo16g1542 644 CDD WD40 172 490 - -
Amo16g1542 644 MobiDBLite consensus disorder prediction 542 572 - -
Amo16g1542 644 MobiDBLite consensus disorder prediction 621 644 - -
Amo16g1542 644 PRINTS G protein beta WD-40 repeat signature 342 356 IPR020472 -
Amo16g1542 644 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Amo16g1542 644 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Amo16g1542 644 SMART WD40_4 264 307 IPR001680 GO:0005515
Amo16g1542 644 SMART WD40_4 166 205 IPR001680 GO:0005515
Amo16g1542 644 SMART WD40_4 311 355 IPR001680 GO:0005515
Amo16g1542 644 SMART WD40_4 362 401 IPR001680 GO:0005515
Amo16g1542 644 SMART WD40_4 212 252 IPR001680 GO:0005515
Amo16g1542 644 MobiDBLite consensus disorder prediction 1 162 - -
Amo16g1542 644 ProSitePatterns Trp-Asp (WD) repeats signature. 294 308 IPR019775 -
Amo16g1542 644 Gene3D - 263 501 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1542 Amo-Chr16 28505390 28509442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1542 276 474 Miscellaneous Gene Families AT5G08390 24.000 2.54e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1542 K24752 - gmx:100815380 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1542 16 28505390 28509442 Amo06g0319 06 4657657 4661692 hybridization