Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0319 ATGGAGGACGAAGCTGACATATACGACGGCGTTAGGGCTCAGTTTCCTCTCAGCTTCGGCAAGCAATCCAAGTCTCAGACCCCTCTCGAAGCCATCCACAACGCCACGCGTCGATCTAATACCAATCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAAGCCTGCAACCGCAAGCGCTCTTCCTTCTCTCTCTTCTTCTTCTAAGGAATGGCTCAATTCCCTACGCTCCTCTAAAAACCCTACCCCTACSCTTGCTGATCGTGGTGGCGGTTCTGAGATTGGCCCGCCGCCACCTCCGCCTCCGACGGCAGAGGATGATAACGACGATGGCGCCATGGTGGGGCCGCCTCCCCCTCCACCTCCGGGGGTGGGTTCGGGGGCGGATGAGGACGAAGACGACGATATGATTGGGCCGCCCCCGCCGCCGTCTGGTAACAATTTGAYCTCCGACGACGACGATGATTCCAATGGAGATGAGTTGGGGAACCGGTTCCGTATTCCACTTAGCAACGAGATTGTCCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTAGATCACACTGGATCTAGAGTGCTTTCTGGAAGTTATGARTACTCAGTGCGGATGTACGATTTTCAAGGAATGAATGCTCGTTTGCAATCGTTTCGACAACTGGAGCCCGCTGAAGGTCATCAAGTTCGCAACTTAAGCTGGAGTCCAACAGCAGATCGGTTTTTGTGTGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGCGATGGGCTTACTTTGGGAGAGTTTATGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACAATCTTAACATCATCAGAGGATGGATCACTGCGAATATGGGATGTAAATGACTTCAAAAGCCAGAAGCAGGTAATTAAACCAAAGCTTGCAAGGCCTGGAAGAGTTCCTGTAACCACATGTGCATGGGACCATGATGGTAAACGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGGTTTGGAGCATTAAGCCTGGGTGGGGGAGTAGGCCAGATATACATATTGAAAAAAGTCATTCAGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAATATCCTATTGTCAAGAAGCTTTGATGGTTCACTGAAGGTTTGGGATATGCGTAAAACAAAGGAAGCATTGAAGGTATTTGAGGATCTTCCAAATAATTACGGACAAACAAATATTGCATTCAGTCCTGGTGAGAATCTATTTTTTACTGGAACATCTGTTGAAAGAGAGAGCACAGTTGGGGGTTTATTGTGCTTCTTTGATAGAGCAAACCTTGAACTTGTTTCAAGAGTRGGCATATCCCCCTCTTGTAGTGTTGTTCGGTGTTGTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGTGATAAAAACCAAGGAGGGACTCACATACTATATGATCCCACCATCAGTGAAAGAGGAGCCCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCAATCGACGATTTTGAGGCAAAGCCTGTCATTCACAATCCCCATGCWTTACCACTGTTTAGAGATCAGCCAAGCCGTAAGCGTCAACGGGAGAAAGTATTAAAGGATCCATTGAAGTCCCACAAGCCTGAACTTCCCATAACAGGACCTGGCTTTGGTGGACGGGTCGGTGCAAGTCAAGGAAGCTTACTAACCCAGTATCTTATGAAGCAAGGAGGTATGATCAAGGAGACATGGATGGAGGAGGATCCAAGGGAAGCCATCTTGAAATATGCTGACGCAGCAGCAAAYGATCCAAAATTCATTGCTCCAGCATATGCAGATACTCAACCTGAGCCAGTGTTCGCAAAGTCGGATTCRGAGGAAGAAGAAAAATGA 1950 0.4703 MEDEADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSNTNPPPPPSSSSSSSSSKPATASALPSLSSSSKEWLNSLRSSKNPTPTLADRGGGSEIGPPPPPPPTAEDDNDDGAMVGPPPPPPPGVGSGADEDEDDDMIGPPPPPSGNNLXSDDDDDSNGDELGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYEYSVRMYDFQGMNARLQSFRQLEPAEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHDGKRIAGGIGDGSIQVWSIKPGWGSRPDIHIEKSHSDDITGLKFSSDGNILLSRSFDGSLKVWDMRKTKEALKVFEDLPNNYGQTNIAFSPGENLFFTGTSVERESTVGGLLCFFDRANLELVSRVGISPSCSVVRCCWHPKLNQIFATVGDKNQGGTHILYDPTISERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGASQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADAAANDPKFIAPAYADTQPEPVFAKSDSEEEEK* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0319 649 CDD WD40 177 495 - -
Amo06g0319 649 SMART WD40_4 316 360 IPR001680 GO:0005515
Amo06g0319 649 SMART WD40_4 269 312 IPR001680 GO:0005515
Amo06g0319 649 SMART WD40_4 217 257 IPR001680 GO:0005515
Amo06g0319 649 SMART WD40_4 367 406 IPR001680 GO:0005515
Amo06g0319 649 SMART WD40_4 171 210 IPR001680 GO:0005515
Amo06g0319 649 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Amo06g0319 649 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Amo06g0319 649 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Amo06g0319 649 MobiDBLite consensus disorder prediction 547 566 - -
Amo06g0319 649 MobiDBLite consensus disorder prediction 626 649 - -
Amo06g0319 649 Gene3D - 171 267 IPR015943 GO:0005515
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 374 408 - -
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 321 IPR001680 GO:0005515
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 362 IPR001680 GO:0005515
Amo06g0319 649 SUPERFAMILY WD40 repeat-like 164 495 IPR036322 GO:0005515
Amo06g0319 649 MobiDBLite consensus disorder prediction 52 88 - -
Amo06g0319 649 ProSitePatterns Trp-Asp (WD) repeats signature. 299 313 IPR019775 -
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Amo06g0319 649 MobiDBLite consensus disorder prediction 18 39 - -
Amo06g0319 649 MobiDBLite consensus disorder prediction 547 577 - -
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 314 - -
Amo06g0319 649 Pfam WD domain, G-beta repeat 374 406 IPR001680 GO:0005515
Amo06g0319 649 Pfam WD domain, G-beta repeat 334 360 IPR001680 GO:0005515
Amo06g0319 649 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Amo06g0319 649 Pfam WD domain, G-beta repeat 176 210 IPR001680 GO:0005515
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 212 - -
Amo06g0319 649 Gene3D - 268 505 IPR015943 GO:0005515
Amo06g0319 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 374 415 IPR001680 GO:0005515
Amo06g0319 649 MobiDBLite consensus disorder prediction 1 167 - -
Amo06g0319 649 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 3 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0319 Amo-Chr6 4657657 4661692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0319 281 479 Miscellaneous Gene Families AT5G08390 24.000 2.00e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0319 K24752 - gmx:100815380 1028.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1542 16 28505390 28509442 Amo06g0319 06 4657657 4661692 hybridization