Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1522 TTTTATCGCGCACTTACAGTTTCCGCTGGATCTGCAACCACAAGAGGCGCTGCTGCATGTTTGTTTCTGTATTCTAGCTCTGAACACATCACTCATACTATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTATTATTCTTTTTCTTTTTTGTCTTCCCTTTTTTTTTGTCTTTGGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCAAGCAGCATGGTTCGCGTTGATGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTTGATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTCGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCCGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGACCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGCGCCGCAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTACGCTCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACTTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGCTAGTTATGCTGCAATGATCAAAGCATCTCCCATACAATTGGCTGGTAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGTGGAGGAAGGATCATAGTTGAACATGCTAGGGTACTGGTTTTGGGTCAGCACTCTGTATTTGGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGTGAAGGTTATCCTCAGCGTGGTCCGCGATGA 1554 0.4562 FYRALTVSAGSATTRGAAACLFLYSSSEHITHTMASSYPGSVSAAQVLFFFFFVFPFFLSLVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLDFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTAPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIASYAAMIKASPIQLAGRQVYIEERRPNSGGAAAARGGRIIVEHARVLVLGQHSVFGRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGEGYPQRGPR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1522 517 CDD RRM_SF 364 436 - -
Amo16g1522 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 362 440 IPR000504 GO:0003723
Amo16g1522 517 CDD NTF2 62 178 IPR018222 -
Amo16g1522 517 SUPERFAMILY RNA-binding domain, RBD 359 448 IPR035979 GO:0003676
Amo16g1522 517 PANTHER GB|AAD20086.1 60 511 - -
Amo16g1522 517 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 60 511 IPR039539 -
Amo16g1522 517 MobiDBLite consensus disorder prediction 472 517 - -
Amo16g1522 517 Gene3D - 59 181 - -
Amo16g1522 517 MobiDBLite consensus disorder prediction 257 289 - -
Amo16g1522 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 433 IPR000504 GO:0003723
Amo16g1522 517 ProSiteProfiles Nuclear transport factor 2 domain profile. 62 176 IPR018222 -
Amo16g1522 517 SUPERFAMILY NTF2-like 61 177 IPR032710 -
Amo16g1522 517 Gene3D - 333 511 IPR012677 -
Amo16g1522 517 Pfam Nuclear transport factor 2 (NTF2) domain 62 176 IPR002075 -
Amo16g1522 517 SMART rrm1_1 363 436 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1522 Amo-Chr16 27944405 27948977 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1522 - - gmx:100787900 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1522 16 27944405 27948977 Amo06g0309 06 4545049 4549663 hybridization