Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0309 TTTTATCGCGCACTTACAGTTTCCGCTGGATCTGCAACCACAAGAGGCGCTGCTGCATGTTTGTTTCTGTATTCTAGCTCTGAACACATCACTCATACTATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTATTATTCTTTTTCTTTTTCTTTTTCGTCTTCCTTTTTTTTGTCTTTGGTGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCCAGCAGCATGGTTCGCGTTGACGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTTGATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTCGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCCGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGATCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGCGCCGCAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTACGCTCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACTTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGCTAGTTATGCTGCAATGATCAAAGCATCTCCCATACAATTGGCTGGTAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGGGGAGGAAGGATCATAGTTGAACATGCTAGGGTACTGGTTTTGGGTCAGCACTCTGTATTTGGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGTGAAGGTTATCCTCAGCGTGGTCCGCGATGA 1563 0.4575 FYRALTVSAGSATTRGAAACLFLYSSSEHITHTMASSYPGSVSAAQVLFFFFFFFVFLFFVFGVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLDFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTAPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIASYAAMIKASPIQLAGRQVYIEERRPNSGGAAAARGGRIIVEHARVLVLGQHSVFGRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGEGYPQRGPR* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0309 520 SMART rrm1_1 366 439 IPR000504 GO:0003723
Amo06g0309 520 MobiDBLite consensus disorder prediction 330 349 - -
Amo06g0309 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 443 IPR000504 GO:0003723
Amo06g0309 520 ProSiteProfiles Nuclear transport factor 2 domain profile. 64 178 IPR018222 -
Amo06g0309 520 CDD RRM_SF 367 439 - -
Amo06g0309 520 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 62 514 IPR039539 -
Amo06g0309 520 CDD NTF2 66 180 IPR018222 -
Amo06g0309 520 PANTHER GB|AAD20086.1 62 514 - -
Amo06g0309 520 Gene3D - 336 514 IPR012677 -
Amo06g0309 520 SUPERFAMILY NTF2-like 63 179 IPR032710 -
Amo06g0309 520 MobiDBLite consensus disorder prediction 475 520 - -
Amo06g0309 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 436 IPR000504 GO:0003723
Amo06g0309 520 MobiDBLite consensus disorder prediction 330 347 - -
Amo06g0309 520 SUPERFAMILY RNA-binding domain, RBD 360 442 IPR035979 GO:0003676
Amo06g0309 520 Gene3D - 61 183 - -
Amo06g0309 520 Pfam Nuclear transport factor 2 (NTF2) domain 64 178 IPR002075 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0309 Amo-Chr6 4545049 4549663 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0309 - - gmx:100787900 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1522 16 27944405 27948977 Amo06g0309 06 4545049 4549663 hybridization