Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1290 ATGGAAAGCAGCCAAGGGGAAAAAGAAAGCGCTTCTGCAGAAGCAGCTGTGTTTGAGGACTTGCTGCCGGTGATGGCAGAGAAGCTTGACGTGGAGACTTTTGTGTCTGAGCTGTGTGGGGGTTTCAAGCTTCTGGCTGACCCCGAAAAGGGTTTGATCACGGCGGAGAGTCTGAYGAGGAACTCGGAGCTTCTGGGCATGGATGGGATGAGCAAAGAGGATGCAGAGGCTATGGTTAGACATGGTGATCTTGATGGGGATGGGAAGCTGAATGAAACTGAGTTTTGCATCCTGATGGTGAGGCTTAGCCCCGAAATGATGCAAGATGCTGAGGCATGGCTTCACAAAGCAATTCAACAAGAGCTCACCAAATCATCAACCTTGTAA 387 0.5013 MESSQGEKESASAEAAVFEDLLPVMAEKLDVETFVSELCGGFKLLADPEKGLITAESLXRNSELLGMDGMSKEDAEAMVRHGDLDGDGKLNETEFCILMVRLSPEMMQDAEAWLHKAIQQELTKSSTL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1290 128 PANTHER CALCIUM-BINDING PROTEIN KIC 8 124 IPR044205 GO:0005509
Amo16g1290 128 Pfam EF-hand domain pair 49 101 IPR002048 GO:0005509
Amo16g1290 128 Gene3D - 16 127 - -
Amo16g1290 128 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
Amo16g1290 128 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Amo16g1290 128 PANTHER CALCIUM-BINDING PROTEIN KIC 8 124 - -
Amo16g1290 128 SUPERFAMILY EF-hand 18 114 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1290 Amo-Chr16 22095753 22096972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1290 7 122 EF-hand Containing Proteins AT2G46600 71.552 1.01e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1290 K24345 - gmx:100787197 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1290 16 22095753 22096972 Amo12g0128 12 1905865 1906496 PCT
Amo12g0128 12 1905865 1906496 Amo16g1290 16 22095753 22096972 PCT