Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0128 ATGGAAACTAACACCAATAACATCATTAAGAGAAGAACTACAACCATGGATCAAGAATCAGACCAACAACAATTCGAGGACTTGCTTCCGGTCATGGCCGAGAAACTCGACGTGGAGACATTCGTCTCCGAACTTTGTGGGGGTTTTAAACTCCTAGCAGACCCTGAAAAGGGCGTGATCACGAGCGAGAGCCTGCGTAGGAACGCGGCTCTCCTCGGCATGGAAGGGATGAGYATGGAGGATGCTGAGGATATGGTAAGACAAGGTGATCTTGATGGTGATGGAAAATTGAATGAGACYGAGTTTTGTATACTTATGGTTAGGCTTAGCCCTGGCATGATGGAAGATGCTGAGTCATGGCTTGAAAAAGCAATTGAAGAAGAGCTAAGGAAATTCTCAACTTAA 405 0.4543 METNTNNIIKRRTTTMDQESDQQQFEDLLPVMAEKLDVETFVSELCGGFKLLADPEKGVITSESLRRNAALLGMEGMSMEDAEDMVRQGDLDGDGKLNETEFCILMVRLSPGMMEDAESWLEKAIEEELRKFST* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0128 134 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Amo12g0128 134 SUPERFAMILY EF-hand 30 132 IPR011992 -
Amo12g0128 134 Pfam EF-hand domain pair 56 108 IPR002048 GO:0005509
Amo12g0128 134 Gene3D - 22 133 - -
Amo12g0128 134 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Amo12g0128 134 PANTHER CALCIUM-BINDING PROTEIN KIC 16 131 - -
Amo12g0128 134 PANTHER CALCIUM-BINDING PROTEIN KIC 16 131 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0128 Amo-Chr12 1905865 1906496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0128 1 129 EF-hand Containing Proteins AT2G46600 65.116 2.38e-57 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0128 K24345 - gmx:100802677 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1290 16 22095753 22096972 Amo12g0128 12 1905865 1906496 PCT
Amo12g0128 12 1905865 1906496 Amo16g1290 16 22095753 22096972 PCT