Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1279 ATGGAAGAAGCAAAACCCAACAAGGCGGCCCTGCTCTCATTCCTGGCCTTCTTCCTCTCACTCTCCGCAGCAGCAGCCACTTCTAACTTCCAAACACAAACACTAACCGTCAACACTCTCCCTCACCCACCCATCCTCTCATGGCCCGAATCCGAATCCAAATCCATCTCCGATTTCGACACAGCCGAATCCGAAGCGGAATCCACCGCCATCTTCTCCCTGCAACTCCACCACATAGACGCTCTTTCCACTAACACAACACCACACCAGCTCTTCAACCTAAGGCTCCAACGAGACGCCGCCAGGGTCCACGCCCTGACCTCCATTGCCGCAGCTACCAACCGGACCCGTGCCGGGACCCGTTCTCCCAGATCCGTTCCGGGTTTCAGCAGCTCAGTCATCTCTGGTCTAGCTCAAGGAAGTGGCGAGTACTTCACGCGCCTCGGTGTTGGAACCCCAGCCAGGTACGTGTACATGGTGCTCGACACCGGAAGCGACGTCGTTTGGCTTCAGTGCGCGCCATGCAGAAAATGCTACCAAGAAGCCGATCCAGTTTTCGACCCATCTAAATCCCGCACCTTCGCGAAAATCCCCTGTGGCGCCCCTCTCTGCCGCCGCCTTGACTCTCCGGGATGCAACCGGAACAAGGTCTGCCAGTATCAGGTCTCCTACGGCGACGGTTCCTTCACATTCGGTGATTTCTCCACCGAAACGCTCACATTTCGAAGGAGGAGGGTTGCGCGCGTGGCACTCGGGTGTGGTCACGACAACGAGGGTTTATTCGTCGGTGCCGCTGGTCTTTTGGGCCTGGGTCGTGGAAGGTTATCATTCCCAGCTCAAACCGGACGCCGGTTCAACCAGAAATTCTCTTACTGCCTCGTTGACCGATCCGCTTCTTCCAAACCATCTTCAATCGTTTTTGGTGACGCTGCCGTTTCTCGAACCGCTCGGTTCACTCCGCTTCTCAAAAACCCTAAGCTTGACACCTTCTACTACGTTGAGCTTATAGGTATCAGCGTCGGCGGCACTGCCGTTCGCGGAGTCTCCGCCTCGCTCTTTCGGATCGACGCCACAGGGAACGGTGGCGTTATAATCGATTCGGGTACTTCAGTAACCCGCTTGACCCGACCCGCTTACATCGCCCTGAGGGATGCTTACCGTGCCGGAGCCTCTCATCTGAAGCGTGCGCCGGAGTTTTCGCTCTTCGACACGTGTTACGATCTGTCGGGGCAGACTTCGGTGCAGGTTCCGAAGGTGGTGCTGCACTTCCGAGGTGCTGACGTGTCGCTGCCGGCTTCGAACTACATGATCCCGGTGGACAACAGTGGCAGCTTCTGCTTTGCGTTCGCCGGAACGATGAGCGGGTTGTCCATTATTGGCAACATTCAGCAACAAGGGTTTCGGGTCGTGTACGACCTTGCGGGGTCTCGGGTCGGGTTCGCGGAGCGAGGGTGCGAGTGA 1461 0.5729 MEEAKPNKAALLSFLAFFLSLSAAAATSNFQTQTLTVNTLPHPPILSWPESESKSISDFDTAESEAESTAIFSLQLHHIDALSTNTTPHQLFNLRLQRDAARVHALTSIAAATNRTRAGTRSPRSVPGFSSSVISGLAQGSGEYFTRLGVGTPARYVYMVLDTGSDVVWLQCAPCRKCYQEADPVFDPSKSRTFAKIPCGAPLCRRLDSPGCNRNKVCQYQVSYGDGSFTFGDFSTETLTFRRRRVARVALGCGHDNEGLFVGAAGLLGLGRGRLSFPAQTGRRFNQKFSYCLVDRSASSKPSSIVFGDAAVSRTARFTPLLKNPKLDTFYYVELIGISVGGTAVRGVSASLFRIDATGNGGVIIDSGTSVTRLTRPAYIALRDAYRAGASHLKRAPEFSLFDTCYDLSGQTSVQVPKVVLHFRGADVSLPASNYMIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFAERGCE* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1279 486 Gene3D Acid Proteases 307 486 IPR021109 -
Amo16g1279 486 Gene3D Acid Proteases 128 306 IPR021109 -
Amo16g1279 486 ProSiteProfiles Peptidase family A1 domain profile. 144 481 IPR033121 -
Amo16g1279 486 CDD cnd41_like 143 485 IPR033873 -
Amo16g1279 486 SUPERFAMILY Acid proteases 137 485 IPR021109 -
Amo16g1279 486 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 485 - -
Amo16g1279 486 PANTHER ASPARTYL PROTEASES 13 485 IPR001461 GO:0004190|GO:0006508
Amo16g1279 486 Pfam Xylanase inhibitor C-terminal 331 481 IPR032799 -
Amo16g1279 486 Pfam Xylanase inhibitor N-terminal 144 309 IPR032861 -
Amo16g1279 486 PRINTS Pepsin (A1) aspartic protease family signature 150 170 IPR001461 GO:0004190|GO:0006508
Amo16g1279 486 PRINTS Pepsin (A1) aspartic protease family signature 363 374 IPR001461 GO:0004190|GO:0006508
Amo16g1279 486 PRINTS Pepsin (A1) aspartic protease family signature 457 472 IPR001461 GO:0004190|GO:0006508
Amo16g1279 486 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 363 374 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1279 Amo-Chr16 21955783 21957243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1279 134 486 Miscellaneous Gene Families AT1G77480 25.964 5.07e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1279 K22683 - gmx:100794269 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1279 16 21955783 21957243 Amo12g0151 12 2300547 2306508 PCT
Amo12g0151 12 2300547 2306508 Amo16g1279 16 21955783 21957243 PCT