Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1249 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTGCATTGAAGTTAGAGAAAACCGAACCTTCCTTGTTTCTTCAGATCCAACCTCCTCCCTCTCTATTTCATTCCACAAACCGCGGAATATTCTTCCAGCGTGTTGTGAAGAACATGTTGGAGAAAGTGGAAGAGTTCAACATGGAGAAGGTGATCCAAGAGTTTGAGACACTTACAAAAGATGCCGGAAGGGTTCAGAGGGAAACCCTCAAGAGGATTCTGGAGGATAATGCTTCAGCTGAGTATTTGCAAAATTTGGGTCTCAACGGAAGAACTGACCCTGAAAGTTTCAAGGCTTGTGTACCACTTGTTACCCACAAAGAATTGGAGCCTTATATACATAGAATCATTGATGGAGACACTTCTTCTATTCTCACTGGAAAACCTATCACTACTATGTCATTAAGCTCTGGCACTACTCAGGGGAAGCCAAAATATCTGCCATGGAATGATGAATTGTTTGAAACCACTATGCAGATATATCAGACCTCTTTTGCCTATAGGAATAGAGAGTTCCCTATCAAGAATGGGAAGGCTTTGAGCTTCATATACAGCAGCAAACAGTTCAAAACAAAAGGGGGTGTGGCAGCCGGAACTGCCACAACCAATGTGTTTCGCAATTCGCGGTACAAGCGGGAGATGAAGGCACTCCAATCCCAATGTTGCAGCCCAGATGAAGTGATATTCGGCCCTGACTTCTTTCAATCACTCTACTGCCACCTCTTATGTGGACTAATCTTCCATGAAGAAGTTCAGCTTGTTTCGTCCGTATTTGCACACAGCATTGTCCATGCTTTTAGAACATTCGAACAGGTATGGGAAGAGCTTTGCACTGATATCAAACAAGGTGTCCTCAGCAGCCGGATCACCGTTCCATCGATCCGAGCAGTCATGTCCAAGCTCCTAAAACCGAACCCAGAGCTTGCCAACCTGATCCATGCAAAATGTGTGGGATTGAGCAACTGGTATGGCCTAATACCAGAGCTTTTTCCTAATGCAAAGTATGTGTACGGAATAATGACAGGGTCAATGGAGCCATATTTGAAAAAGATGAGGCATTATGCTGGGGAGCTGCCATTGTTGACCGCTGACTATGGATCCTCTGAAGGGTGGATTGCTGCAAATGTGAACCCAAGACTTGCACCTGAATTTGCTACTTATGCTGTGCTTCCTCAAATTGGTTACTTTGAATTCATTCCACTCACACAGCTTGAAAATAATGATGCTTCTTCTTCATTCCTCTCTATTGATCTCAACCCAGTGGGCCTCACTGAGGTCAAGGTTGGTGAGGAGTACGAAATTGTCATCACCAATCCAGCAGGTTTATACAGGTATAGGCTAGGGGACGTTGTGAAGGTTATGGGATTCCATAACTCAAGTCCAGAACTGAAATTCGTTCGTCGGAGCAGTCTTCTTCTTACCATCAACATTGACAAGAACACCGAGGCGGATTTGCAGTTGGCGGTGGAAGCGGCGGGGAAAGTGTTGGCAGAGGAGAAACTAGAAGTAGTTGACTTCACCAGCCATGTTGACTTGTCAAAGGAGCCAGGGCATTATGTTATATTCTGGGAAATCAATGGAGAAGCTAGTGAACAAGTTCTTGGTGAATGCTGCAACTGTTTGGACAGGTCCTTTGTTGATGCAGGGTACACTAGCTCCCGCAAGGTCAACTGCATTGGGCCCCTCGAACTCCGACTTGTTAGGAGGGGAACATTCCAGAAGATTCTAGAACATTACCTTGGACTTGGAGCTACTGTTAGTCAGTATAAGACTCCAAGATGTGTAGGCCCTACAAACCCCACTGTCTTGCAAATCTTGACTGATAATGTTGTCAAAACCTATCTCAGTACTGCTTTCAATTGA 1911 0.4505 LSLSLSLSLSLSLSLSTALKLEKTEPSLFLQIQPPPSLFHSTNRGIFFQRVVKNMLEKVEEFNMEKVIQEFETLTKDAGRVQRETLKRILEDNASAEYLQNLGLNGRTDPESFKACVPLVTHKELEPYIHRIIDGDTSSILTGKPITTMSLSSGTTQGKPKYLPWNDELFETTMQIYQTSFAYRNREFPIKNGKALSFIYSSKQFKTKGGVAAGTATTNVFRNSRYKREMKALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFHEEVQLVSSVFAHSIVHAFRTFEQVWEELCTDIKQGVLSSRITVPSIRAVMSKLLKPNPELANLIHAKCVGLSNWYGLIPELFPNAKYVYGIMTGSMEPYLKKMRHYAGELPLLTADYGSSEGWIAANVNPRLAPEFATYAVLPQIGYFEFIPLTQLENNDASSSFLSIDLNPVGLTEVKVGEEYEIVITNPAGLYRYRLGDVVKVMGFHNSSPELKFVRRSSLLLTINIDKNTEADLQLAVEAAGKVLAEEKLEVVDFTSHVDLSKEPGHYVIFWEINGEASEQVLGECCNCLDRSFVDAGYTSSRKVNCIGPLELRLVRRGTFQKILEHYLGLGATVSQYKTPRCVGPTNPTVLQILTDNVVKTYLSTAFN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1249 636 Coils Coil 64 84 - -
Amo16g1249 636 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 55 636 - -
Amo16g1249 636 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 55 636 IPR004993 -
Amo16g1249 636 Pfam GH3 auxin-responsive promoter 70 611 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1249 Amo-Chr16 21229917 21233796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1249 68 633 EF-hand Containing Proteins AT1G23160 38.038 3.35e-137 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1249 K14506 - gmx:100794598 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1249 16 21229917 21233796 Amo12g0202 12 2953812 2959981 PCT
Amo12g0202 12 2953812 2959981 Amo16g1249 16 21229917 21233796 PCT