Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0202 ATGTTAGAGAAAGTTGAAGGTTTCAACATGGAGAAAGTAATAGAGGAATTTGAGGAAGTTACTAAGGATGCTGGTAGAGTTCAAATTGAAACTCTTAGGAAGATTCTTGAAGATAATTCAGAAGCTGAATACCTTCAGAATTTAGGACTTAATGGAAGAACTGATCCTCAGAGTTTCAAGAACTGTGTCCCACTTGTTACKCATAAAGAGCTTGAACCTTACATCAATAGAATGATTGATGGTGATCTTTCTTCAATCCTCACTTCAAAACCAATCACAACTATGTCTCTAAGCTCTGGAACTACTCAGGGGAAGCCAAAGTTTGTGCCATGGAATGATGAGCTTTTTGAGACCACAGTTCAGATATATAAAACCTCTTTTGCCTTTAGAAACAAAGAATTTCCAATCACAAGTGGAAAGGCCTTAAGCTTCATATACAGCAGCAAGCAATTCAAGACCAAAGGAGGGTTAGCAGCAGGAACAGCAACAACAAATGTTTTCAGAAATTCAAGATACACTGTTGCAATGCAAGCACTAAAATCACAATGTTGCAGCCCTGAAGAAGTGATATTTGGTCCTGATTTTCACCAATCACTCTATTGCCACCTACTTTGTGGCCTAATCTTCTGTGATGAGGTTCAATTTGTGTCCTCAACTTTTGCACACAGCATTGTCCATTCTTTTAGGACATTTGAGCAAGTTTGGGAGGATCTTGTTGCTGATATAAGGGATGGTGTCCTTACCGAAAGGGTCACTGTCCCTTCCTTGAGGAATGCTATGTCCAAAATTCTCAAGYCTGATCCCAATTTGGCTAACATCATCCAAACAAAAATCATGGGGTTAAGCAATTGGTATGGATTAATTCAAGAGCTATTTCCAAATGCAAAGTATGTGTATGGAATAATGACAGGGTCAATGGAGCCATATTTAAAGAAGTTAAGGCACTATGCTGGTGACCTACCACTGTTGACTTCTGATTATGGATCTTCAGAAGGTTGGATTGCTACAAATGTGAATCCAACATTGCCACCTGAGTCTGCCTTGTACACTGTTCTTCCTCAAATTGGATACTTTGAATTTATACCTCAAAATAAGGCAGACTCTGATTTCATTGATGTGGAACCTCAGCCTGTTGGACTCACTCAAGTTAAGGTTGGTCAAGAATATGAAATTGTTATCACCACTCCAGCAGGCTTGTACAGGTATCGACTCGGCGATATTGTTAAGGTTATGGGATTCTACAACTCATCGCCGCAACTAAAATTCGTCCGGCGGAGCAGCCTTCTACTTACAATCAACATAGACAAGAACACAGAGAAGGATCTTCAATTAGCTGTGGAAGAAGCATCAAAGTTTCTAGCTGAAGAAAAATTAGAAGTTGTTGATTACACAAGTTATGTTGATGTGTCCAAAGATCCAGGGCACTATGTTATAGTTTGGGAAATTAGTGGCGAAGCAAGTGAAGAAGTTCTTAGTGAATGTTGCAATTGCTTGGACAAATCCTTTGTTGATGCAGGGTATACTAGCTCTAGGAAGGTCAATTGCATCGGCGCCCTCGAACTCCGWGTCGTCCGGCAYGGAACATTCCAGAAGATTCTAGAACATTATATAGGGTTAGGATCTGCTGTTAGTCAGTTCAAGACACCAAGGTGTGTAGGGTCTAACAATGCCAAAGTGTTGCAAATATTGAATGAGAATGTTGTGAACAAGTACTTTAGTTCTGCTTTCAATAATTGA 1737 0.3972 MLEKVEGFNMEKVIEEFEEVTKDAGRVQIETLRKILEDNSEAEYLQNLGLNGRTDPQSFKNCVPLVTHKELEPYINRMIDGDLSSILTSKPITTMSLSSGTTQGKPKFVPWNDELFETTVQIYKTSFAFRNKEFPITSGKALSFIYSSKQFKTKGGLAAGTATTNVFRNSRYTVAMQALKSQCCSPEEVIFGPDFHQSLYCHLLCGLIFCDEVQFVSSTFAHSIVHSFRTFEQVWEDLVADIRDGVLTERVTVPSLRNAMSKILKXDPNLANIIQTKIMGLSNWYGLIQELFPNAKYVYGIMTGSMEPYLKKLRHYAGDLPLLTSDYGSSEGWIATNVNPTLPPESALYTVLPQIGYFEFIPQNKADSDFIDVEPQPVGLTQVKVGQEYEIVITTPAGLYRYRLGDIVKVMGFYNSSPQLKFVRRSSLLLTINIDKNTEKDLQLAVEEASKFLAEEKLEVVDYTSYVDVSKDPGHYVIVWEISGEASEEVLSECCNCLDKSFVDAGYTSSRKVNCIGALELRVVRHGTFQKILEHYIGLGSAVSQFKTPRCVGSNNAKVLQILNENVVNKYFSSAFNN* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0202 578 Pfam GH3 auxin-responsive promoter 16 554 IPR004993 -
Amo12g0202 578 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 577 IPR004993 -
Amo12g0202 578 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE 1 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0202 Amo-Chr12 2953812 2959981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0202 17 574 EF-hand Containing Proteins AT1G23160 37.696 8.31e-133 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0202 K14506 - gmx:100813492 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0202 12 2953812 2959981 Amo12g0202 12 2953812 2959981 ECH
Amo16g1249 16 21229917 21233796 Amo12g0202 12 2953812 2959981 PCT
Amo12g0202 12 2953812 2959981 Amo16g1249 16 21229917 21233796 PCT