Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0948 ATGGAGCACATAGGAGTAGCGGGGCATCATTTTTCTAGAGCTTTGCGCTCTTCTATTCTTATAAATAAAGGCTACGAGCTAATAGCTTTGTTTCCAGGTTTTGGGAAACGAAAAGCTCTTCCATCAAACCAGGAAACTCACAGTCCAAATGCAGAAGCAAAGGGTAAGGTGGCTCTAATCACCGGAGCAGCCAGTGGAATCGGAGAAGAAACGGTGAGACTCTTCGCCGAAAACGGAGCCTATGTCGTCGCCGCCGATGTTCAAGACGATCTCGGTCATCAAGTCATAGCTTCAATAGGCTCAGATAGAATCACCTACCGTCACTGTGACGTCAGAGACGAGAATCAGGTTGAAGAGACCGTCAATTTCACGTTGGAAAAGCACGGCCGCATCGATATCCTCTTCAGCAACGCCGGCATACTTGGGTCCCTTTCCGGTATCCTCGACCTTGATCTCAAAGATTTCGATAACACCATTGCCATCAACGTTCGCGGAGTGGCGGCAACGATAAAGCACGCGGCACGCGCCATGGTTGCTAAGAAAACCCGCGGCTCCATCATATGCACGACGAGCGTGGCGGCCACAGTTAATAGTGTTTCGCCTTACGGAGTTGCAACGCCACTTTCATGTAAGCCGTTTAATCTTGGTCCTGATGAGGTAGAAGCTTCTACTTCGGAATATGCGAATCTGAAAGGGGTGGTGTTGAAGGCTCGGCATATTGCGGAGGCGGCGTTGTACCTTGCTTCAGATGAATCTGGTTACGTGAGTGGGCATAACTTGGTGGTTGACGGTGGTTTCACGGTGGTTAATGGCAGCTTCTCTGCAAGTTATAATTTGTTCACGAATAGTTAG 852 0.4918 MEHIGVAGHHFSRALRSSILINKGYELIALFPGFGKRKALPSNQETHSPNAEAKGKVALITGAASGIGEETVRLFAENGAYVVAADVQDDLGHQVIASIGSDRITYRHCDVRDENQVEETVNFTLEKHGRIDILFSNAGILGSLSGILDLDLKDFDNTIAINVRGVAATIKHAARAMVAKKTRGSIICTTSVAATVNSVSPYGVATPLSCKPFNLGPDEVEASTSEYANLKGVVLKARHIAEAALYLASDESGYVSGHNLVVDGGFTVVNGSFSASYNLFTNS* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0948 283 Pfam short chain dehydrogenase 56 200 IPR002347 -
Amo16g0948 283 Gene3D - 42 275 - -
Amo16g0948 283 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 196 275 - -
Amo16g0948 283 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 54 195 - -
Amo16g0948 283 PRINTS Glucose/ribitol dehydrogenase family signature 230 250 IPR002347 -
Amo16g0948 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 194 IPR002347 -
Amo16g0948 283 PRINTS Glucose/ribitol dehydrogenase family signature 129 140 IPR002347 -
Amo16g0948 283 PRINTS Glucose/ribitol dehydrogenase family signature 57 74 IPR002347 -
Amo16g0948 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 269 IPR036291 -
Amo16g0948 283 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 196 275 - -
Amo16g0948 283 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 54 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0948 Amo-Chr16 15148702 15149793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0948 49 268 Acyl Lipid Metabolism Gene Families AT3G55290 29.344 5.95e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0948 - - gmx:100811279 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0948 16 15148702 15149793 Amo06g0092 06 963757 968265 hybridization