Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0092 ATGTCGTCTAAGCAAAGGTTGGAAGGCAAGGTTGCAATTGTGACCGGGGGAGCAAATGGAATAGGAGCAGAAGCAGCGAGGTTATTTGTGGAAAACGGTGCACTTGTTGTTATAGCAGATGTTAACGATGAATTGGGGCTTCAAGTTGCAAGTTCCATTGGCGTAGACAAGGTGAGTTACCATCACTGCGATGTTAGAGACGAGAAACAAGTTGAAGAAACCGTTGCTTTTGCTATCAAGAAATATGGAAGCTTAGATATCATGTTCAGTAACGCTGGAATTGCAGGCTCTCTCTGTAACATACTTGATTATGATTTGAATGACTTTGATAACACAATAGCTGTGAATGTTCGTGGAGCAGCGGCGTGTATTAAGCACGCGGCACGTGTCATGGTGGAAAGAAAGACACGTGGCTCCATAATTTGCACTGCTAGTATAGCTTCTTTGGTTGGTGGCAGTGGAGCTGGTCATGGTTATACCGCATCCAAACATGGTCTTGTGGGTCTTGTGCGTTCGGCGTGTGGTGAGCTTGGAGCTTATGGRATTAGGGTCAATTCGATTTCACCTTATGTTATGGCCACACCTTTGGCATGTGAAGCTCTTGGTATGGAAGCAAGCGAAGTTGAAAGTGCTGGTGTTGCTGGTGCTAATTTGCAGGGGATTGTGTTGAAGCCAATTCATGTTGCACAAACTGCTTTGTTTCTTGCTTCTGATGAATCGGCTTATATTAGTGGACACAATTTGGTCGTTGACGGAGGCTTGTTAGCCGTTAATAGCCCTGTTTCAAAAAAATAA 795 0.444 MSSKQRLEGKVAIVTGGANGIGAEAARLFVENGALVVIADVNDELGLQVASSIGVDKVSYHHCDVRDEKQVEETVAFAIKKYGSLDIMFSNAGIAGSLCNILDYDLNDFDNTIAVNVRGAAACIKHAARVMVERKTRGSIICTASIASLVGGSGAGHGYTASKHGLVGLVRSACGELGAYGIRVNSISPYVMATPLACEALGMEASEVESAGVAGANLQGIVLKPIHVAQTALFLASDESAYISGHNLVVDGGLLAVNSPVSKK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0092 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Amo06g0092 264 Pfam Enoyl-(Acyl carrier protein) reductase 16 254 - -
Amo06g0092 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 261 - -
Amo06g0092 264 Gene3D - 1 263 - -
Amo06g0092 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 IPR002347 -
Amo06g0092 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Amo06g0092 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Amo06g0092 264 PANTHER OXIDOREDUCTASE-RELATED 3 261 - -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 11 28 IPR002347 -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 83 94 IPR002347 -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Amo06g0092 264 PRINTS Glucose/ribitol dehydrogenase family signature 218 238 IPR002347 -
Amo06g0092 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 256 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0092 Amo-Chr6 963757 968265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0092 7 261 Acyl Lipid Metabolism Gene Families AT3G55290 29.520 3.78e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0092 - - gmx:100798299 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0948 16 15148702 15149793 Amo06g0092 06 963757 968265 hybridization