Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0858 AGCCCTCCGCCGAGCCTGAAAAGAAGAAGCGGAAGACCTCGGAGACTGGAACCTTATCTCATAACGAAGCTGGAATCTGCTGAGAAGACCTGGCAAGAATTATCGGTTAAGCTTGCTGACCCTGACGTTGTGTCTAATCCGAGTGAGTACCAAAAATTGGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAGGTTTAAAGAGTGTGAAAAGGCTCTAGAAGAAACGAAAGCTTTGGCAAAGGACGATGAAAATGACGAGGATATGGTTGAAATGATATCTTCAGAAATAGACTCTTTGTCAAGGCAAATCGCAGAGCTTGAGGATAAGCTCAAGGTTTTACTTCTTCCCAGTGATCCTCTTGATGCAAGAAACATAATGCTTGAAGTACGAGCAGGTACTGGTGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTTCGGATGTATGAAAAATACAGTGAGCTGAATTCTTGGAAACATTCTGTTATATCAAGCTCTCCGGCAGAGAAAGGAGGGTACAAAACTTATGTGATGGAGATAAAAGGAAAACGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCATCGAGTTCAACGTGTTCCTCTAACAGAGACACAGGGTCGCGTACATACTTCTACTGCAACGGTGGCAATCATGCCAGAGGCTGATGAAGTTGAAGTAGTAATCGACCCAAAAGATATTGAACTTACTACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTTTTTCACAAACCAACGGGAATCCGTATCTTTTGTACTGAAGAAAGGACTCAACTTCAGAACAAGAATCGCGCTTTTCAATTGCTCCGTGCAAAACTATACGAGATGAAGGTAAGGGAGCAGCAAGAGTCAATTCGAAATCAAAGGAAATCACAGGTTGGTACAGGTGCACGTGCAGAAAAAATTCGGACATATAATTACAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTTTGAGCTCACCTCCTTTCTTAATGGTAACATAGAAGATGCTGTTCAGTCTTGTGTTACAACGGAGCAGAAGGAGCTCCTGGAAGAACTTGCTGAATCTGTAGGTGCTCCTGCTGGCTGA 1149 0.4378 SPPPSLKRRSGRPRRLEPYLITKLESAEKTWQELSVKLADPDVVSNPSEYQKLAQSVAELDEVVSTYRRFKECEKALEETKALAKDDENDEDMVEMISSEIDSLSRQIAELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKYSELNSWKHSVISSSPAEKGGYKTYVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKNRAFQLLRAKLYEMKVREQQESIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGNIEDAVQSCVTTEQKELLEELAESVGAPAG* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0858 382 PANTHER LD18447P 14 380 - -
Amo16g0858 382 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 246 262 IPR000352 GO:0003747|GO:0006415
Amo16g0858 382 SMART PCRF_a_2 82 197 IPR005139 GO:0006415
Amo16g0858 382 Hamap Peptide chain release factor 1 [prfA]. 20 374 IPR004373 GO:0006415|GO:0016149
Amo16g0858 382 Gene3D - 126 235 - -
Amo16g0858 382 Pfam PCRF domain 28 222 IPR005139 GO:0006415
Amo16g0858 382 Gene3D - 236 295 - -
Amo16g0858 382 Gene3D - 296 380 - -
Amo16g0858 382 Gene3D - 12 124 - -
Amo16g0858 382 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 14 380 - -
Amo16g0858 382 Pfam RF-1 domain 229 339 IPR000352 GO:0003747|GO:0006415
Amo16g0858 382 Coils Coil 70 90 - -
Amo16g0858 382 Coils Coil 94 114 - -
Amo16g0858 382 TIGRFAM prfA: peptide chain release factor 1 17 375 IPR004373 GO:0006415|GO:0016149
Amo16g0858 382 SUPERFAMILY Release factor 29 370 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0858 Amo-Chr16 13808670 13814170 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0858 K02835 - gmx:100805037 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0858 16 13808670 13814170 Amo16g0858 16 13808670 13814170 ECH
Amo16g0858 16 13808670 13814170 Amo06g0080 06 829789 832635 hybridization