Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0080 ATGCTTAACATGGCGACAGAGGAAATGGGACARGCCATAGAGGAAGAACGAAGACTGCAACATTTGCTGTTGAAGTCCTTACTTCCTAAGGATGATGCTGATGAAAGGGACTGCATTTTGGAGGTCAGAGCAGGCACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGGACATTTTCAAAATGTACGAAAAGTATGCTCACAAGAATGGCTGGAAATTTGTAGTAGTAGATATTGCTCAATCAGATTTTAAAGGATACAAGGAAGCTAGTGCAGCAATTGCTGGAGATGGTGCTTTTGGGAAACTAAAATTTGAAAGTGGAATACATAGAGTACAGAGAGTTCCTGTGACAGAAAAATTAGGACGAGTTCATACCAGTGCTGTTTCTGTCGCAATCCTCCCTCAGGCTGACGAGGTTGATGTTCAATTGAAGAATGAAGACTTAAAAATTGATACCTACAGATCTGGTGGTTCGGGTGGTCAGCATGCAAATACAACAAACAGTGCTGTTAGAATAACTCACATTCCGACTGGGATTACAGTTGCTATACAAGATGAGCGCTCTCAACATCAAAACAAGGCCAAAGCACTTAAAGTACTGTGTGCAAAGCTATTTGAAATGGAAAGGGTCCGAGCTCATAGTACACGATCAAAACTTCGGTCAGAACAGATTGGCAGCGGTGATAGATCTGAACGCATCCGGACATACAACTTTCCTCAAGGTCGTGTCACYGATCATAGAGTTGGTATAACTTATCACTCAATAGATGATGTGATGCAAGGTGAGAATCTTGAGGTATTTATTGATGCTCTTTTATTGCAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCTTCTCAGTAA 864 0.4132 MLNMATEEMGQAIEEERRLQHLLLKSLLPKDDADERDCILEVRAGTGGEEASLFAMDIFKMYEKYAHKNGWKFVVVDIAQSDFKGYKEASAAIAGDGAFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADEVDVQLKNEDLKIDTYRSGGSGGQHANTTNSAVRITHIPTGITVAIQDERSQHQNKAKALKVLCAKLFEMERVRAHSTRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSIDDVMQGENLEVFIDALLLQEEMDAIATFSSSQ* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0080 287 Pfam RF-1 domain 137 247 IPR000352 GO:0003747|GO:0006415
Amo06g0080 287 Pfam PCRF domain 1 130 IPR005139 GO:0006415
Amo06g0080 287 SUPERFAMILY Release factor 2 275 IPR045853 -
Amo06g0080 287 Gene3D - 38 263 - -
Amo06g0080 287 Gene3D - 144 232 - -
Amo06g0080 287 PANTHER LD18447P 1 285 - -
Amo06g0080 287 PANTHER LD18447P 1 285 - -
Amo06g0080 287 SMART PCRF_a_2 1 105 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0080 Amo-Chr6 829789 832635 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0080 K02835 - gmx:100800412 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0858 16 13808670 13814170 Amo06g0080 06 829789 832635 hybridization