LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0751	TTATTTTGGTGTTTGAATAAAATTTATTTAGGATTAATTATTTTCATCTTCTTAAAATTTTTGATAATAATAATAATAATTATAGGGATCGCTGGGGCTGAACCACAACGCCTTTCTACTCTCAAGCTTAACTCCCGCATTCTCCAGGAGTCTATTGCTAAACAGATCAACGAAAACCCAGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGGAGAATTTAAGCGCCTGCTTGGTGTTAAACCAACTCCTAAGAAGGAACTGATAGGTGCACCCATTGTGACTCATCCAAAATCATTGAAATTGCCAAAGGAGTTTGATGCAAGGACTCAATGGTCTCAATGTAGTACCATTGGAAGAATTCTAGATCAGGGTCATTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAGTCATTATCAGATCGGTTTTGCATTCATTTTGATGTGAATATCTCTCTCTCTGTGAACGATCTTCTCGCATGCTGTGGCTTTTTGTGTGGATCTGGTTGTGATGGAGGGTATCCCATAAATGCATGGCGATACCTAGTCAGCCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGCTGTTCCCATCCTGGTTGTGAGCCCGCATACAGTACCCCCAAGTGTGTAAAAAAGTGTGTGAGCGGGAATCTGCTTTGGAAGAAATCAAAGCACTATAGTGTCAATGCATATAAGATCAAGTCTAATCCCCATGATATCATGGCAGAAATTTATAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTACGAGGATTTTGCTCTCTACAAATCAGGAGTTTACAAACACATCACAGGTGTGGAACTCGGTGGTCATGCTGTGAAGCTGATAGGATGGGGAACATCTGATGATGGAGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGAGATGATGGTTACTTTAAGATCAGAAGGGGGACAAATGAATGTGGAATTGAAGAAGACGTTACAGCTGGTATGCCTTCCACCAAAAATCTCGTACTCGAAGTCACTGACACGGGTGCCGATGCTGTTGATGGTGCTTCATTCTGA	1101	0.4187	LFWCLNKIYLGLIIFIFLKFLIIIIIIIGIAGAEPQRLSTLKLNSRILQESIAKQINENPEAGWEAAINPRFSNYTVGEFKRLLGVKPTPKKELIGAPIVTHPKSLKLPKEFDARTQWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPINAWRYLVSHGVVTEECDPYFDQIGCSHPGCEPAYSTPKCVKKCVSGNLLWKKSKHYSVNAYKIKSNPHDIMAEIYKNGPVEVAFTVYEDFALYKSGVYKHITGVELGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEEDVTAGMPSTKNLVLEVTDTGADAVDGASF*	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0751	366	CDD	Peptidase_C1A_CathepsinB	109	342	-	-
	Amo16g0751	366	Pfam	Peptidase family C1 propeptide	48	90	IPR012599	GO:0004197\|GO:0050790
	Amo16g0751	366	SMART	pept_c1	108	343	IPR000668	GO:0006508\|GO:0008234
	Amo16g0751	366	PRINTS	Papain cysteine protease (C1) family signature	130	145	IPR000668	GO:0006508\|GO:0008234
	Amo16g0751	366	PRINTS	Papain cysteine protease (C1) family signature	307	313	IPR000668	GO:0006508\|GO:0008234
	Amo16g0751	366	PRINTS	Papain cysteine protease (C1) family signature	291	301	IPR000668	GO:0006508\|GO:0008234
	Amo16g0751	366	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	26	350	-	-
	Amo16g0751	366	Pfam	Papain family cysteine protease	108	342	IPR000668	GO:0006508\|GO:0008234
	Amo16g0751	366	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	26	350	-	-
	Amo16g0751	366	SUPERFAMILY	Cysteine proteinases	51	344	IPR038765	-
	Amo16g0751	366	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	130	141	IPR000169	-
	Amo16g0751	366	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	289	299	IPR025660	-
	Amo16g0751	366	Gene3D	Cysteine proteinases	39	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0751	Amo-Chr16	11971184	11976313	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0751	K01363		-	gmx:100778103	632.484

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g0751	16	11971184	11976313	Amo06g0038	06	403602	408577	hybridization