LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo06g0038	ATGGGTTCTACCCTTGCGATTTTATTCTTAACTTTCTGCACTTGCTATCTACAGATCGCTGGGGCCGAACCACAACGCCTTTCTACTCTCAAGCTTAATTCCCGCATTCTCCAGGAGTCTATTGCTAAACAGATCAACGAAAACCCAGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGGAGAATTTAAGCGCCTGCTTGGTGTTAAACCAACTCCTAAGAAGGAACTGATAGGTGCACCCATTGTGACTCATCCAAAATCATTGAAATTGCCAAAGGAGTTTGATGCAAGGACTCAATGGTCTCAATGTAGTACCATTGGAAGAATTCTAGATCAGGGTCATTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAGTCATTATCAGATCGGTTTTGCATTCATTTTGATGTGAATATCTCTCTCTCTGTGAACGATCTTCTCGCATGCTGTGGCTTTTTGTGTGGATCTGGTTGTGATGGAGGGTATCCCATAAATGCATGGCGATACCTAGTCAGCCATGGTGTTGTCACTGAAGAGTGTGACCCATACTTTGATCAAATTGGCTGTTCCCATCCTGGTTGTGAGCCCGCATACAGTACCCCCAAGTGTGTAAAAAAGTGTGTGAGCGGGAATCTGCTTTGGAAGAAATCAAAGCACTATAGTGTCAATGCATATAAGATCAAGTCTAATCCCCATGATATCATGGCAGAAATTTATAAGAATGGGCCAGTTGAAGTTGCATTCACTGTTTACGAGGATTTTGCTCTCTACAAATCAGGAGTTTACAAACACATCACAGGTGTGGAACTCGGTGGTCATGCTGTGAAGCTGATAGGATGGGGAACATCTGATGATGGAGAGGACTATTGGCTTCTCGCAAATCAGTGGAATAGAAGTTGGGGAGATGATGGTTACTTTAAGATCAGAAGGGGGACAAATGAATGTGGAATTGAAGAAGACGTTACAGCTGGTATGCCTTCCACCAAAAATCTCGTACTCGAAATCACTGACGCGGGTGCCGATGCTGTTGATGGTGCTTCATTCTGA	1068	0.4391	MGSTLAILFLTFCTCYLQIAGAEPQRLSTLKLNSRILQESIAKQINENPEAGWEAAINPRFSNYTVGEFKRLLGVKPTPKKELIGAPIVTHPKSLKLPKEFDARTQWSQCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPINAWRYLVSHGVVTEECDPYFDQIGCSHPGCEPAYSTPKCVKKCVSGNLLWKKSKHYSVNAYKIKSNPHDIMAEIYKNGPVEVAFTVYEDFALYKSGVYKHITGVELGGHAVKLIGWGTSDDGEDYWLLANQWNRSWGDDGYFKIRRGTNECGIEEDVTAGMPSTKNLVLEITDAGADAVDGASF*	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo06g0038	355	Pfam	Papain family cysteine protease	97	331	IPR000668	GO:0006508\|GO:0008234
	Amo06g0038	355	PANTHER	CATHEPSIN B-LIKE PROTEASE 3	17	339	-	-
	Amo06g0038	355	PRINTS	Papain cysteine protease (C1) family signature	119	134	IPR000668	GO:0006508\|GO:0008234
	Amo06g0038	355	PRINTS	Papain cysteine protease (C1) family signature	280	290	IPR000668	GO:0006508\|GO:0008234
	Amo06g0038	355	PRINTS	Papain cysteine protease (C1) family signature	296	302	IPR000668	GO:0006508\|GO:0008234
	Amo06g0038	355	CDD	Peptidase_C1A_CathepsinB	98	331	-	-
	Amo06g0038	355	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	278	288	IPR025660	-
	Amo06g0038	355	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	17	339	-	-
	Amo06g0038	355	Gene3D	Cysteine proteinases	28	339	-	-
	Amo06g0038	355	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	119	130	IPR000169	-
	Amo06g0038	355	SUPERFAMILY	Cysteine proteinases	40	333	IPR038765	-
	Amo06g0038	355	Pfam	Peptidase family C1 propeptide	37	79	IPR012599	GO:0004197\|GO:0050790
	Amo06g0038	355	SMART	pept_c1	97	332	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo06g0038	Amo-Chr6	403602	408577	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo06g0038	K01363		-	gmx:100778103	643.654

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g0751	16	11971184	11976313	Amo06g0038	06	403602	408577	hybridization