Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0601 GACAAGGTTTGTATAAGGTTCCACCTCACTCTTTTTCAAAGTGTGATTATTCACTCTCTCTGTTTCCACTTCTCCAGATCATCAAGTTCCTTCGTCATCGCTGAGCACTCTCTGACAATGTCTAAACAAAGGTTGGAAGGCAAGGTGGCAATAGTGACCGGAGGAGCAAGTGGAATAGGAGCAGAAGCAGTGAGGGTATTTGTGGAAAACGGTGCGTTTGTAGTTGTAGCAGATGTTCAAGACGAGCTCGGTCACCACCTTGCAAGTTCCATTGGCTTGTTAGAGAAGGTGAGTTACCGCCACTGCGACATCAGAGACGAGAAACAAGTTGAAGAAACCGTGGCTTTCGCGGTGGAGAAATACGGAAGCCTAGACATCATGTTCAGCAACGCTGGAATTGCAGGCTCTATCTCTAACATACTTGATTTAGATCTGAACGATTTTGACAACGCCATGGCTGTGAATCTTCGCGGAGCAGCAGCGTGCATCAAGCATGCTGCACGTGTCATGGTGGCAAGAAGGACACGTGGATCCATAATATGCACAGGGAGTGTGGTTGCTTCGGTTGGTATTGGCGCAGCTGCTGGTGTTAGTTATACTGCATCCAAACACGGCCTTATAGGACTTGTGCGTTCGGCGTGTGGTGAGCTTGGCCGTTACGGGATCAGAGTGAATTCGGTTTCACCATATGTTGTGGCCACGCCTCTTGTGTGTAGAGCGCTGAATGTGGAGGCAAGTGAAGTTGAAAGTGCTGGTGGTGTTGGTACCAGTTTGCGGGGGATTGTGTTGAAGCCAATACATGTTGCGGAAGCAGCTTTGTTTCTTGCTTCTGATGAATCTGCTTACATTAGTGGACATGATTTGACCGTTGACGGAGGTTTCTTGGCCGTTAATCGCGGTATTGAACTCTCCCTAGCTAGCTTCAAAACTAAATGA 936 0.4797 DKVCIRFHLTLFQSVIIHSLCFHFSRSSSSFVIAEHSLTMSKQRLEGKVAIVTGGASGIGAEAVRVFVENGAFVVVADVQDELGHHLASSIGLLEKVSYRHCDIRDEKQVEETVAFAVEKYGSLDIMFSNAGIAGSISNILDLDLNDFDNAMAVNLRGAAACIKHAARVMVARRTRGSIICTGSVVASVGIGAAAGVSYTASKHGLIGLVRSACGELGRYGIRVNSVSPYVVATPLVCRALNVEASEVESAGGVGTSLRGIVLKPIHVAEAALFLASDESAYISGHDLTVDGGFLAVNRGIELSLASFKTK* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0601 311 Pfam Enoyl-(Acyl carrier protein) reductase 54 294 - -
Amo16g0601 311 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 40 301 - -
Amo16g0601 311 Gene3D - 34 307 - -
Amo16g0601 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 296 IPR036291 -
Amo16g0601 311 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 186 214 IPR020904 GO:0016491
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 258 278 IPR002347 -
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 199 218 IPR002347 -
Amo16g0601 311 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Amo16g0601 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Amo16g0601 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 133 IPR002347 -
Amo16g0601 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Amo16g0601 311 PANTHER OXIDOREDUCTASE-RELATED 40 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0601 Amo-Chr16 9654676 9655854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0601 45 293 Acyl Lipid Metabolism Gene Families AT3G55290 28.185 1.91e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0601 - - gmx:100798299 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0601 16 9654676 9655854 Amo06g0094 06 988054 989199 hybridization