Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0506 ATGTGTCACTTCACCTTCCTCGGTTGGTTGCTTCTTTCTCTCTCACTCAACATGCCTCTCTTCCTTCCTTCTTTGTTTTTCCTTCTAACTCTTCTCTCAACCACTCTTCTCTCTCACTCCTTCCCCTTCCCCAACCATGGCCACCGCCCTCACCCTCACCGCTTCGCCTCTCACAACTACAGAGATGCTCTCAGCAAGTCCATCATCTTCTTTGAAGGCCAGAGGTCTGGCAAGCTCCCTTCTAACCAGAGGATAACTTGGAGGAGAGACTCTGCTCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTGGGAGGGTACTACGATGCAGGGGACAATGTGAAGTTCGGTTTTCCGATGGCATTCACGACCACCATGCTCTCATGGAGTGTTCTCGAGTTCGGTGGGGTCATGAAGGGCGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGAACTGATTACCTTCTCAAAGCCACTGCACATCCTGGCACCATTTATGTTCAGGTGGGAGACGCTAAGAAGGACCACGCGTGTTGGGAGAGGCCAGAAGACATGGATACTCCAAGAAATGTGTACAAGATAGACAAGAGTACCCCCGGTTCAGAGGTGGCCGCGGAAACCGCTGCGGCTCTTGCAGCTGCTTCTCTTGTTTTCAAGAAAACCGACCCCACCTACTCCAAAATTTTGGTTAGGAGGGCCATCTCTGTTTTCCAATTTGCTGATAAATACAGAGGATCATACAGCAATGGGTTGAAGCCATTTGTGTGCCCGTTCTACTGCTCTTACTCTGGTTATGAGGATGAGCTTCTTTGGGGTGCTGCTTGGTTGCACAAGGCTACTAGGAACTCCATCTATCTTAACTACATTAAGGTTAATGGACAAACACTTGGTGCTGCAGAATCTGACAATACATTTGGGTGGGATAACAAGCATGTTGGAGCAAGAATCCTTCTCTCTAAGGAATTTCTTGTTCAGAAAGTGCAAACCCTGCATGACTACAAGGGTCACGCGGACAATTTCATCTGTTCCCTCATTCCAGGAACCTCTTTCTCTTCGGCACAATACACACCAGGTGGCCTTCTATTCAAGATGAGTGATAGCAACATGCAGTATGTTACATCCACCTCCTTCCTTCTCTTAACCTATGCCAAGTACTTGACCAAATCCCACACCGTCGTCAACTGTGGCGGCACCACCGTTACTCCCAAGAGGCTCCGTGCAATAGCCAAAAAGCAGGTGGATTACTTGCTGGGAGACAATCCCTTGAAGATGTCGTACATGGTGGGGTATGGTCCAAGGTACCCAAGAAGGATACACCACCGGGGATCATCTCTGCCGTCCATTTCTGTACACCCTGGCAAGATCCAATGCTCAGCAGGGTTCGGTGTCATGAACTCACAATCCCCCAACCCCAACGTTCTTGTTGGTGCTGTGATTGGAGGGCCGGATCTGCATGATAGGTTCCCGGATCAACGGTCAGATTATGAGCAGTCAGAGCCAGCCACTTATATGAACGCACCTCTTGTGGGTGCACTCGCTTATCTTGCACACTCATTTGGCCAACTCTGA 1572 0.4975 MCHFTFLGWLLLSLSLNMPLFLPSLFFLLTLLSTTLLSHSFPFPNHGHRPHPHRFASHNYRDALSKSIIFFEGQRSGKLPSNQRITWRRDSALSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVLEFGGVMKGELQNAREAIRWGTDYLLKATAHPGTIYVQVGDAKKDHACWERPEDMDTPRNVYKIDKSTPGSEVAAETAAALAAASLVFKKTDPTYSKILVRRAISVFQFADKYRGSYSNGLKPFVCPFYCSYSGYEDELLWGAAWLHKATRNSIYLNYIKVNGQTLGAAESDNTFGWDNKHVGARILLSKEFLVQKVQTLHDYKGHADNFICSLIPGTSFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTKSHTVVNCGGTTVTPKRLRAIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSISVHPGKIQCSAGFGVMNSQSPNPNVLVGAVIGGPDLHDRFPDQRSDYEQSEPATYMNAPLVGALAYLAHSFGQL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0506 523 PANTHER ENDO-1,4-BETA-GLUCANASE 29 523 - -
Amo16g0506 523 SUPERFAMILY Six-hairpin glycosidases 57 521 IPR008928 GO:0005975
Amo16g0506 523 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 489 507 IPR033126 -
Amo16g0506 523 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 416 442 IPR018221 -
Amo16g0506 523 Gene3D - 55 523 IPR012341 GO:0005975
Amo16g0506 523 PANTHER ENDOGLUCANASE 17 29 523 - -
Amo16g0506 523 Pfam Glycosyl hydrolase family 9 60 513 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0506 Amo-Chr16 8342550 8344816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0506 18 519 Glycoside Hydrolase AT1G02800 73.861 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0506 K01179 - gmx:100789144 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0506 16 8342550 8344816 Amo16g0506 16 8342550 8344816 ECH
Amo16g0506 16 8342550 8344816 Amo12g3144 12 120028783 120032366 PCT
Amo12g3144 12 120028783 120032366 Amo16g0506 16 8342550 8344816 PCT