Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3144 ATGGCTTTCTTTGTTTCTTCCATCACTACTTTGTTCTCTCTTTTCACCATCACTTGTATTTCCATTGTTATTCTTCCACATTGTGATGCTTTTCCATTACATTACAATCACCACCCTTTGTTGCACCCTCACCACCATCACCCTCACATTGCTAGTCACAATTACAGAGATGCCCTCACAAAATCTATAATGTTCTTTGAAGGCCAGAGGTCTGGTAAACTTCCTCCTAACCAGAGAATGTCTTGGAGGAGAGATTCTGGTCTCTATGATGGCTCAGCTCTTCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAGTTTGGATTTCCAATGGCATTCACCATAACCATGTTGTCATGGAGTGTTCTTGAGTTTGGTGGACTAATGAAAGGAGAGTTGCAGAATGCAAGAGAAGCAATTCGTTGGGGCACTGATTATCTTCTCAAAGCTACTGCATATCCAAACACCATCTTTGTTCAGGTGGGAGATGCTAAGAAGGATCATGCTTGTTGGGAGAGACCAGAGGACATGGACACACCAAGAAGTGTGTTCAAGATTGATGCAAACAACCCTGGTTCAGAAGTTGCTGCTGAAACTGCTGCAGCTCTTGCAGCAGCTTCCCTTGTTTTCAGAAGAAGTGACCCCATGTACTCCAAGATTTTGGCCAGAAGGGCCATTAAGGTCTTCCAGTTTGCTGATAAATATAGAGGATCATACAGCAATGCATTGAAGCCTGTTGTGTGCCCCTATTATTGCTCTTACTCTGGTTATCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTGCACAAGGCCACCAAGAATCCAATGTATCTTAACTACATTCAAGTCAATGGTCAGATCCTTGGTGCTGCAGAGTATGATAACACTTTTGGGTGGGATAACAAGCATGTTGGGGCAAGGATACTTCTTTCCAAGGAATTTCTTGTCCAAAAGGAGCAATCACTCCATGACTACAAGGGGCATGCAGACAATTTTGTTTGTTCCTTAATCCCTGGGTCCTCTTCTGCTGAATATACCCCAGGTGGACTATTGTTCAAAATGAGTGATAGCAACATGCAATATGTGACATCTACCTCTTTCTTACTGTTAGCATATGCCAAATACTTGACTTCTTCACAAACAGTTGTTAACTGTGGTGGAACCACAGTAACACCAAACATGCTCAGAAGAATTGCCAAGAAACAGGTGGATTACTTGCTAGGAGATAACCCTTTGAAGATGTCCTACATGGTAGGGTATGGTCCAAGGTACCCTCAAAGGATACACCACAGAGGCTCATCTCTACCCTCCATTGCAGTTCACCCTGGGAAGATCCAATGTTCAGCAGGGTTCACTGTGATGAACTCACAATCCCCTAATCCTAACATTCTTGTAGGTGCTATTGTTGGTGGACCTGATCTTCATGATAGGTTCCCTGATCAACGGTCAGATTATGAACAATCTGAGCCAGCTACTTATATCAATGCACCACTTGTTGGAACTCTAGCTTATCTTGCACACTCATTTGGTCAACTCTAG 1551 0.4346 MAFFVSSITTLFSLFTITCISIVILPHCDAFPLHYNHHPLLHPHHHHPHIASHNYRDALTKSIMFFEGQRSGKLPPNQRMSWRRDSGLYDGSALHVDLVGGYYDAGDNVKFGFPMAFTITMLSWSVLEFGGLMKGELQNAREAIRWGTDYLLKATAYPNTIFVQVGDAKKDHACWERPEDMDTPRSVFKIDANNPGSEVAAETAAALAAASLVFRRSDPMYSKILARRAIKVFQFADKYRGSYSNALKPVVCPYYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEYDNTFGWDNKHVGARILLSKEFLVQKEQSLHDYKGHADNFVCSLIPGSSSAEYTPGGLLFKMSDSNMQYVTSTSFLLLAYAKYLTSSQTVVNCGGTTVTPNMLRRIAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSIAVHPGKIQCSAGFTVMNSQSPNPNILVGAIVGGPDLHDRFPDQRSDYEQSEPATYINAPLVGTLAYLAHSFGQL* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3144 516 Gene3D - 50 516 IPR012341 GO:0005975
Amo12g3144 516 Pfam Glycosyl hydrolase family 9 55 506 IPR001701 GO:0004553|GO:0005975
Amo12g3144 516 PANTHER ENDO-1,4-BETA-GLUCANASE 32 516 - -
Amo12g3144 516 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 409 435 IPR018221 -
Amo12g3144 516 PANTHER ENDOGLUCANASE 17 32 516 - -
Amo12g3144 516 SUPERFAMILY Six-hairpin glycosidases 50 514 IPR008928 GO:0005975
Amo12g3144 516 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 482 500 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3144 Amo-Chr12 120028783 120032366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3144 45 512 Glycoside Hydrolase AT1G02800 76.709 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3144 K01179 - gmx:100777718 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0506 16 8342550 8344816 Amo12g3144 12 120028783 120032366 PCT
Amo12g3144 12 120028783 120032366 Amo16g0506 16 8342550 8344816 PCT