Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0424 ATGTCCATTTTTCTACGAAGATCACTGAGGACTCGTTTATTGAGCTCCAACAATTTTAACTTGTTTCTCCCTAACTCCTTTGATTCTTCCCAAACCATTAACCATCGCCGCCACTTCTCAGATAACCTCTTTCAAACCGTTTGCTTTCGCTCAACTTCCCTTTCAACTGAAAATCACTGCTACGGTTATGGTTATTCGCATCGCCAACACCACCAGTCCACATGCCGTCGGTTCTTCGCTTCTGAAGCCGCCGCCACCGCCGCCCAACGCTCAACCTCCGATGGCCTCACGGTGGAGGGAATTCTCGCGAACAATTGGAACATTCTAGACGATAACGAAAGCGATTGGAAGAGCCATGCCTCTGCGGTTGCGCAATCTATTCATCTCATCAAACGCCGCTTACAGTGGAAGAAATTGAAGGTAAGGTTGGATATGTTATCTGTGCAGCTGAATAAGGCAGATCTTTGGGATGACCCTGTGCACGCTGGTAACATTAGCAGAGAGCATGGAACCCTAATGGGAAAGGTGAAAGAGGTGAATGCGCTTGAGCAAGAGTTACTCGAGCATATTGACATGATTAAGCTTGCTCGTGATGAGAATGACTCAGAATTGGAATCGGAATCATTGAAAGCTTTGCGTGACATGAGAAAAAATGCAAAGGAAAAAGAGCTAGAGGCACTGCTAGCTGGGGAGCAGGATTCTTGTTCTTGCTTCATCGAGGTTCAGGCTGGGGCCGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTTATGCAGATGTATAAATCATGGGCCCACCGACGTGGATATAATGTAACTGTAATAGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCTACAATTAAAGTAGATGGTGAGTTTGCATTTGGATATGCAAAAGCAGAAGTAGGAGTCCACAGACTTGTGAGAATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCTGCAGTAGCTGTGATTCCAATCCTTGGTGATGGATCTAGTCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGGTTTCGTTCTGGCGGTCCCGGTGGCCAGCATGCTAATACAACTGAAAGTGCAATAAGAATAATTCATATTCCTACAGGAATTACTGCAACTTGTCAGAATGAAAGATCCCAACATCAGAATAAGGCTTCTGCGATGGCTGTGCTCAAGTCGAGATTAGACCAACTGGAGATGGCACGCCAGGCTCAGTTGAATTCACAACATACACAATCTCTCACGGACATAACTTGGGGCAGTCAGATACGCAGTTATGTGCTCCATCCTTATCGAATGGTGAAAGATCTTAGAACTAATTATGAGGTTTCAGACCCTGACTCTGTCCTTGAGGGAGATATAGACGGCTTCATCTTGAGCTATCTATCAGCTACTTTGGATAAAGAAGACAGTGATGCTTGA 1452 0.4525 MSIFLRRSLRTRLLSSNNFNLFLPNSFDSSQTINHRRHFSDNLFQTVCFRSTSLSTENHCYGYGYSHRQHHQSTCRRFFASEAAATAAQRSTSDGLTVEGILANNWNILDDNESDWKSHASAVAQSIHLIKRRLQWKKLKVRLDMLSVQLNKADLWDDPVHAGNISREHGTLMGKVKEVNALEQELLEHIDMIKLARDENDSELESESLKALRDMRKNAKEKELEALLAGEQDSCSCFIEVQAGAGGTESMDWAAMVMQMYKSWAHRRGYNVTVIDEMPGEIAGIKRATIKVDGEFAFGYAKAEVGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSSHVQINESDLRIERFRSGGPGGQHANTTESAIRIIHIPTGITATCQNERSQHQNKASAMAVLKSRLDQLEMARQAQLNSQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDGFILSYLSATLDKEDSDA* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0424 483 Pfam RF-1 domain 341 448 IPR000352 GO:0003747|GO:0006415
Amo16g0424 483 Gene3D - 239 468 - -
Amo16g0424 483 SUPERFAMILY Release factor 140 476 IPR045853 -
Amo16g0424 483 Gene3D Release factor 114 225 - -
Amo16g0424 483 TIGRFAM prfB: peptide chain release factor 2 115 474 IPR004374 GO:0005737|GO:0006415|GO:0016149
Amo16g0424 483 Pfam PCRF domain 141 329 IPR005139 GO:0006415
Amo16g0424 483 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 73 481 - -
Amo16g0424 483 SMART PCRF_a_2 194 304 IPR005139 GO:0006415
Amo16g0424 483 Gene3D - 335 431 - -
Amo16g0424 483 Hamap Peptide chain release factor 2 [prfB]. 112 476 IPR004374 GO:0005737|GO:0006415|GO:0016149
Amo16g0424 483 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 73 481 - -
Amo16g0424 483 Coils Coil 179 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0424 Amo-Chr16 6839646 6842246 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0424 K02836 - gmx:100797427 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0424 16 6839646 6842246 Amo06g0350 06 4984888 4989790 hybridization