Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo06g0350 | ATGTATGAAAAATACAGTGAGCTGAATTCTTGGAAACATTCTGTTATATCAAGCTCTCCGGCAGAGAAAGGAGGGTACAAAACTTATGTGATGGAGATAAAAGGAAAACGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCATCGAGTTCAACGTGTTCCTCTAACAGAGACACAGGGTCGCGTACATACTTCTACTGCAACGGTGGCAATCATGCCAGAGGCTGATGAAGTTGAAGTAGTAATCGACCCAAAAGATATTGAACTTACTACAGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTTTTTCACAAACCAACGGGAATCCGTATCTTTTGTACTGAAGAAAGGACTCAACTTCAGAACAAGAATCGCGCTTTTCAATTGCTCCGTGCAAAACTATACGAGATGAAGGTAAGGGAGCAGCAAGAGTCAATTCGAAATCAAAGGAAATCACAGGTTGGTACAGGTGCACGTGCAGAAAAAATTCGGACATATAATTACAAGGACAACAGGGTTACTGACCACAGATTGAAGATGAACTTTGAGCTCACCTCCTTTCTTAATGGTAACATAGAAGATGCTGTTCAGTCTTGTGTTACAACGGAGCAGAAGGAGCTCCTGGAAGAACTTGCTGAATCTGTAGGTGCTCCTGCTGGCTGA | 693 | 0.4242 | MYEKYSELNSWKHSVISSSPAEKGGYKTYVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNKNRAFQLLRAKLYEMKVREQQESIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGNIEDAVQSCVTTEQKELLEELAESVGAPAG* | 231 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo06g0350 | 230 | Pfam | RF-1 domain | 77 | 187 | IPR000352 | GO:0003747|GO:0006415 | |
| Amo06g0350 | 230 | PANTHER | LD18447P | 1 | 228 | - | - | |
| Amo06g0350 | 230 | ProSitePatterns | Prokaryotic-type class I peptide chain release factors signature. | 94 | 110 | IPR000352 | GO:0003747|GO:0006415 | |
| Amo06g0350 | 230 | PANTHER | PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC | 1 | 228 | - | - | |
| Amo06g0350 | 230 | Gene3D | - | 149 | 225 | - | - | |
| Amo06g0350 | 230 | Gene3D | - | 87 | 148 | - | - | |
| Amo06g0350 | 230 | SUPERFAMILY | Release factor | 1 | 218 | IPR045853 | - | |
| Amo06g0350 | 230 | Pfam | PCRF domain | 1 | 70 | IPR005139 | GO:0006415 | |
| Amo06g0350 | 230 | Gene3D | - | 1 | 86 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo06g0350 | Amo-Chr6 | 4984888 | 4989790 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo06g0350 | K02835 | - | gmx:100805037 | 428.328 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo16g0424 | 16 | 6839646 | 6842246 | Amo06g0350 | 06 | 4984888 | 4989790 | hybridization |