Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0065 ATGAAAAAACGTCTCCTTTACTCCTTAATCTCAACCCTTAAACCCAAATCCAAAGCGTTCTATTTCTATATCTCGTCCTTATCACTTTCGAGTAAACAATCAAAATGGAACCCGTTAACCAACGTTGTCATTACGAACCCAACCCTGGTGGCCATGGAGTCTTGCTCCACCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGACCCGCACGGGCCTCATGGGCCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACGCCGGAGACGTTCGTTATGCCCACGCTCTCTTTGACCGTATTGAACACCCCAACACCTTTATGTGGAACACCATGATCAGGGGCTATTGCAGGGCCAATGCTCCTGCCATGGCGTTCTCCTTCTTCCTCCGAATGCTTCTCCAACTCTCCAAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAAGCGTGCGAGCTGTTCTCGGGTTCTGTTGAGGGGGAACTGGTGCACTGTTTGATTCGGAAGACGGGTTTTGATTCTGAGTTGCTAGTGCGAAATGGGTTGGTTCATTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTACTTGGACCACAATGATTGACGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTGCGGTTATCCATGAAGACAACATAGCAAGGAAGAATGTAAGGTATACTTTGAGTTTAAACAATGCATTATTGGACATGTATGTGAAATGTGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGGAGACTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCTCATAAAAACGTGGTCTCATGGAATGCAATGATAGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAGTTGTTTCGGGAAATGATCGCAGCAGGTATGATTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCATTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGATAAAGCCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGAAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGGAATGTCGAGCTTGCTAAATTGTCAGCTGGTAACCTTATGAAGTTGAATCCAGAAGACAGTGGAACATATATTCTCCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAAGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATTGAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGATCTATAAAATCTTCTTGGTTGTCGTTGTGGTGGTGAGTTTGGTGTGTACAATAATCGATGACCTTCTTGAGAGTCTTGGAGTCAACGCAATCCAATGGAATCTTGCTCTCTTCATGGTTGTACAACCCATCTTCGATCATGTTGTTTATGATCACCGAATGTTGCACCATCACTTGTTCTTCCACACTAAAAATCTCCTTTTCCGAACTGCATAG 2103 0.4432 MKKRLLYSLISTLKPKSKAFYFYISSLSLSSKQSKWNPLTNVVITNPTLVAMESCSTMRQLRQIQARMTRTGLMGHTFPASRALAFCALSDAGDVRYAHALFDRIEHPNTFMWNTMIRGYCRANAPAMAFSFFLRMLLQLSKMDCRTFVFSLKACELFSGSVEGELVHCLIRKTGFDSELLVRNGLVHFYAERSWLKSARQVFDESSERDVVTWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLIAVIHEDNIARKNVRYTLSLNNALLDMYVKCGSLMAARELFDKMETKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFREMIAAGMIPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIIVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGIKPKREHYSCMIDLLGRTGLLEEAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMKLNPEDSGTYILLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIEGEFKEFLVADESNTQSEEIYKIFLVVVVVVSLVCTIIDDLLESLGVNAIQWNLALFMVVQPIFDHVVYDHRMLHHHLFFHTKNLLFRTA* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0065 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 327 IPR002885 -
Amo16g0065 700 Pfam PPR repeat 271 297 IPR002885 -
Amo16g0065 700 Pfam PPR repeat 404 428 IPR002885 -
Amo16g0065 700 Pfam PPR repeat 111 137 IPR002885 -
Amo16g0065 700 Pfam PPR repeat 299 323 IPR002885 -
Amo16g0065 700 Pfam PPR repeat 504 529 IPR002885 -
Amo16g0065 700 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 302 635 - -
Amo16g0065 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 112 137 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 212 246 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 299 323 IPR002885 -
Amo16g0065 700 TIGRFAM PPR: pentatricopeptide repeat domain 271 298 IPR002885 -
Amo16g0065 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Amo16g0065 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 139 IPR002885 -
Amo16g0065 700 Gene3D Tetratricopeptide repeat domain 164 259 IPR011990 GO:0005515
Amo16g0065 700 Gene3D Tetratricopeptide repeat domain 48 163 IPR011990 GO:0005515
Amo16g0065 700 Gene3D Tetratricopeptide repeat domain 260 395 IPR011990 GO:0005515
Amo16g0065 700 Gene3D Tetratricopeptide repeat domain 404 627 IPR011990 GO:0005515
Amo16g0065 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 302 635 - -
Amo16g0065 700 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 31 308 - -
Amo16g0065 700 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 308 - -
Amo16g0065 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Amo16g0065 700 Pfam PPR repeat family 209 253 IPR002885 -
Amo16g0065 700 Pfam PPR repeat family 327 374 IPR002885 -
Amo16g0065 700 Pfam PPR repeat family 431 477 IPR002885 -
Amo16g0065 700 Pfam E motif 547 609 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0065 Amo-Chr16 871891 875606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0065 98 631 Glycoside Hydrolase AT3G49170 33.029 8.24e-90 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0065 - - ccaj:109796361 940.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0065 16 871891 875606 Amo06g0435 06 6203229 6205091 hybridization