Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0435 ATGGAGTCTTGCTCCACCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGATCCGCACGGGCCTCATGGACCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACTCCGGAGACGTTCGTTATGCCCACGCTGTCTTCGACCGTATTGAACAACCCAACACGTTCATGTGGAACACCATGATCAGGGGCTACAGCAGGGCCAATGTTCCTGCTATGGCGTTTTCCTTCTTTCTCCGAATGCTTCGCCAACTCTCCGAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAGGCGTGCGAGCAGTTCTCGGGTTCTGTTGAGGGGGAATCGGTGCACTGTTTGATTCGGAAGACGGGCTTCGATTCTGAGTTGGTAGTGCGAAATGGGTTGGTTCACTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTGCTTGGACCACAATGATTGATGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTACGGTGCTCTCCGCGTGTTCCCAGAAGGGTGATCTTGTCATGGGAAGGAGTATCCATGAAGACATAGCAAGGAAGAATGTAAGGCATACTTTGAGTTTAAATAATGCATTGTTGGACATGTATGTGAAATGTGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGGAGATTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCTCATAAAAACGTGGTCTCATGGAATGCAATGATTGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAATTGTTTCGGGAAATGATCGCAGCAGGTATGGTTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCGTTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGGTAAAGCCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGGAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGGAATGTCGAGCTTGCTAAATTGTCAGCTGGTAACCTTATGAGGTTGAATCCAGAAGACAGTGGAACATATATTCTGCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAAGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATACAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGATCTATAAAGTACTGGATCTAATATATTTGTTGGCAAAATTGGAAGACTATGACTCTGAGTTATTTATTATAGGCTTCAATGGCTAA 1863 0.4493 MESCSTMRQLRQIQARMIRTGLMDHTFPASRALAFCALSDSGDVRYAHAVFDRIEQPNTFMWNTMIRGYSRANVPAMAFSFFLRMLRQLSEMDCRTFVFSLKACEQFSGSVEGESVHCLIRKTGFDSELVVRNGLVHFYAERSWLKSARQVFDESSERDVVAWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLITVLSACSQKGDLVMGRSIHEDIARKNVRHTLSLNNALLDMYVKCGSLMAARELFDKMEIKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFREMIAAGMVPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIVVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGVKPKREHYSCMIDLLGRTGLLEGAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMRLNPEDSGTYILLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIQGEFKEFLVADESNTQSEEIYKVLDLIYLLAKLEDYDSELFIIGFNG* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0435 620 Gene3D Tetratricopeptide repeat domain 342 445 IPR011990 GO:0005515
Amo06g0435 620 Gene3D Tetratricopeptide repeat domain 211 341 IPR011990 GO:0005515
Amo06g0435 620 Gene3D Tetratricopeptide repeat domain 104 210 IPR011990 GO:0005515
Amo06g0435 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 88 IPR002885 -
Amo06g0435 620 Gene3D Tetratricopeptide repeat domain 2 103 IPR011990 GO:0005515
Amo06g0435 620 PANTHER - 79 275 - -
Amo06g0435 620 PANTHER - 265 573 - -
Amo06g0435 620 PANTHER - 5 154 - -
Amo06g0435 620 Pfam PPR repeat family 290 337 IPR002885 -
Amo06g0435 620 Pfam PPR repeat family 394 440 IPR002885 -
Amo06g0435 620 Pfam PPR repeat family 158 205 IPR002885 -
Amo06g0435 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 290 IPR002885 -
Amo06g0435 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Amo06g0435 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Amo06g0435 620 TIGRFAM PPR: pentatricopeptide repeat domain 61 87 IPR002885 -
Amo06g0435 620 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Amo06g0435 620 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Amo06g0435 620 TIGRFAM PPR: pentatricopeptide repeat domain 262 286 IPR002885 -
Amo06g0435 620 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Amo06g0435 620 Gene3D Tetratricopeptide repeat domain 446 593 IPR011990 GO:0005515
Amo06g0435 620 Pfam E motif 510 572 IPR046848 -
Amo06g0435 620 Pfam PPR repeat 60 87 IPR002885 -
Amo06g0435 620 Pfam PPR repeat 234 259 IPR002885 -
Amo06g0435 620 Pfam PPR repeat 262 286 IPR002885 -
Amo06g0435 620 Pfam PPR repeat 367 391 IPR002885 -
Amo06g0435 620 Pfam PPR repeat 467 492 IPR002885 -
Amo06g0435 620 SUPERFAMILY TPR-like 133 285 IPR011990 GO:0005515
Amo06g0435 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0435 Amo-Chr6 6203229 6205091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0435 47 598 Glycoside Hydrolase AT3G49170 33.453 4.11e-97 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0435 - - ccaj:109796361 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0065 16 871891 875606 Amo06g0435 06 6203229 6205091 hybridization