Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0040 ATGATGAAGCTCCTCTGCCGTCTCTGTTCGCACCTCCGGTGGTCAAAACGGCGCCGTTTCCGCAAATCGAACCGAAACAAAAGCACCCTAACCACCAGCACTTGTTCATCAGCATTGGTTCACCCAAACAAGAAACCGCAGAAACCAATCCGCGTAGCAACCTTCAACGCCGCACTCTTCTCCATGGCACCAGCAGTCCCCACCAACAACGACGAAGAACAAAACGCGCGCTGTGATCTCAAACCCAAAAGCATTCTCAAGCACTCTCCTCTTCACCCAATAACTTCGGTTGTTCCACCACCGGAACGTCAATCGAAGCTGAGAGTTTCCATCAACCTACCAGATAACGAGATTTCGCTTCTGAGAAGCAGACAATCGAGCTTCTCGGAGCACGAGAGAGAAGGAGGAGGATCTTCTTGGCGATGGAGAAGCGTGGTGATGAGACAGTGCAACAGCTTCTCCGGCGTGGAAGGGAATGATGTGTACGGAATAAAGAGCCGGAAGACGGTGCTGGAGGTTCTGAGGGAGTTGGACGCTGACGTTTTGGCTTTGCAGGATGTGAAGGCGGACGAACAAAACGACATGAAGCCATTGTCGGATTTGGCCAAAGCTTTGGGCATGAACTACGTCTTTGCTGATAGCTGGGCTCCTGAATACGGCAACGCCGTTTTGTCCAGGTGGCCCATCAAACGCTCCAACGTTCAGAAACTCTTCGACCACACCGATTTCAGGAATGTTCTGAAGGCCACCATCGATGTACCTGAAGCTGGTGAAATGAACTTTTACTGCACCCATCTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATTAATGCAATAATCCAGTCTAATAATGATGAGCCTCACATCTTAGCTGGAGGGCTTAACTCACTTGATGAATCAGATTACTCACAAGAAAGATGGACTGATATTGTTAAGTACTATGAAGAGATTGGAAAACCAACACCAAAGGTTGAAGTGATGAAATATCTAAAGAGTAAGCACTACACGGATGCTAAGGACTATTCAGGGGAATGTGAATCTGTAGTGATGATTGCCAAAGGACAAAGTGTGCAAGGGACATGTAAGTATGGAACAAGGGTAGATTACATATTATCATCATCAGATTCAACATATAAGTTCGTAGCAGGGTCCTATCTTGTGCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTCAAAGTTGATGTGGTTAAAGAAAATAATAGCATTCTAAACAGTAGTCCTCTTCAAGAAGAAAACAATAATGTAACAAAGAAGCAGCAGAGAATGAAAACACAGCCAAGTCCATCAACTTGTATATGGAACAAAAACACATACGGGAGAGATATTGATTGA 1362 0.4545 MMKLLCRLCSHLRWSKRRRFRKSNRNKSTLTTSTCSSALVHPNKKPQKPIRVATFNAALFSMAPAVPTNNDEEQNARCDLKPKSILKHSPLHPITSVVPPPERQSKLRVSINLPDNEISLLRSRQSSFSEHEREGGGSSWRWRSVVMRQCNSFSGVEGNDVYGIKSRKTVLEVLRELDADVLALQDVKADEQNDMKPLSDLAKALGMNYVFADSWAPEYGNAVLSRWPIKRSNVQKLFDHTDFRNVLKATIDVPEAGEMNFYCTHLDHLDENWRMKQINAIIQSNNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEIGKPTPKVEVMKYLKSKHYTDAKDYSGECESVVMIAKGQSVQGTCKYGTRVDYILSSSDSTYKFVAGSYLVLSSKGTSDHHIVKVDVVKENNSILNSSPLQEENNNVTKKQQRMKTQPSPSTCIWNKNTYGRDID* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0040 453 Pfam Endonuclease/Exonuclease/phosphatase family 166 398 IPR005135 GO:0003824
Amo16g0040 453 MobiDBLite consensus disorder prediction 415 440 - -
Amo16g0040 453 Coils Coil 174 194 - -
Amo16g0040 453 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 18 446 - -
Amo16g0040 453 SUPERFAMILY DNase I-like 166 405 IPR036691 -
Amo16g0040 453 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 18 446 - -
Amo16g0040 453 Gene3D Endonuclease/exonuclease/phosphatase 151 409 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0040 Amo-Chr16 713429 717531 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0040 - - vra:106757483 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0040 16 713429 717531 Amo16g0040 16 713429 717531 ECH
Amo16g0040 16 713429 717531 Amo12g3010 12 117722798 117726998 PCT
Amo12g3010 12 117722798 117726998 Amo16g0040 16 713429 717531 PCT