Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3010 ATGCTCAAGCTCCTCAACACCAAGCTCCGCCGCTTCTTCCTCCTCCGGTGGTGGCCACTACGCCGCCGTAGTTCAAGGTGCAAAGTAGTTATCACAAAGAAGCCCAAAAACGACAACCCAAAACCCCAAACCGACCCAAGCTCGAATCTTTCCACCATTTCCGATCAAAACGCCCAAATGGGTACTCAAAAACACGAAAAACCAATTCGCATCGCAACCTTCAACGCCGCACTGTTTTCCATGGCGCCAGCGGTTCCACCTCAGAGAACAGAGAAAGCTCAGAACTTTGACGACCAAAACGGCGTCGCTTCGAAACAACGAAGACCCTTTGACCAAAATTCGAGGCCAAAGTCAACGAACGAGAAACCGAGGAGCATTCTGAAGCGTTCTCATTCTCACTCTCCCCTTCATCATCACATACCCTGTTCTGAAAACAGAGCACTCTGCATCAGCAACAAGCATCAACAACAACCACAACACCACTTTTCGAAATCGAAGCTAAGAGTTTCCATTAATTTACCGGATAACGAGATCTCCATGCTGAGAAATCGCCAACCGAGCTTCTCGGAGCACGAGAAGGTGATTGCGGCGCGAAACGGGTGGCAGAGGAAGACGGTGGTGGAGGTGCTGAAAGAGGTAGGTGCAGATATATTGGGTTTGCAAGAAGTGAAGGCAGAAGAAGAGAATGGGATGAAGCCACTTTCAGATTTGGCGAAGGCATTGGGAATGGATCACTTTGTGTTTGCAGAGAGTTGGGCACCTCAGTTTGGAAATGCTGTCTTATCCAAATGGCCCATTAAACGTTGGACTTCCATCAACCTCTTTGATCACTCTGATTTTAGGAATGTTTTGAAGGCTACTATTGATGTACCTCAAGTAGGTGAACTCAATTTTTATTGTACTCACCTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATAAATGCAATAATTCAATCTAATGATGAGCCTCACATCTTAGCAGGAGGCCTTAATTCATTGGATGAATCAGATTACTCCCAAGAAAGATGGACAGATATTGTTAAGTACTATGAAGAGATGGGAAAGCCAACACCAAAAGTTGAAGTGATGAAATATCTCAAAAGTAAACAATACACAGATGCTAAGGACTTCGCCGGAGAATGCGAATCTGTCGTCGTGATTGCCAAAGGCCAAAGTGTTCAAGGGACATGCAAGTATGGAACTCGAGTCGATTACATATTATCGTCGTCGAATTGTTCGTATAAGTTCGTCCCCGGGTCCTATTTAGTCCTCTCCTCAAAAGGGACTTCAGATCATCACATAGTGAGAGCTGATGTGATGAAGGTAAATAGCAATAATGAAGGAAATAATGTGACAAGAAAAACTAAACAAGAAAGAAAACAGAAAGTTATAAGAATAACACATGAGACTCCCTCTAAAGGTATATGGAAAACACACCATGGAGAGATATATTAA 1461 0.4401 MLKLLNTKLRRFFLLRWWPLRRRSSRCKVVITKKPKNDNPKPQTDPSSNLSTISDQNAQMGTQKHEKPIRIATFNAALFSMAPAVPPQRTEKAQNFDDQNGVASKQRRPFDQNSRPKSTNEKPRSILKRSHSHSPLHHHIPCSENRALCISNKHQQQPQHHFSKSKLRVSINLPDNEISMLRNRQPSFSEHEKVIAARNGWQRKTVVEVLKEVGADILGLQEVKAEEENGMKPLSDLAKALGMDHFVFAESWAPQFGNAVLSKWPIKRWTSINLFDHSDFRNVLKATIDVPQVGELNFYCTHLDHLDENWRMKQINAIIQSNDEPHILAGGLNSLDESDYSQERWTDIVKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVVIAKGQSVQGTCKYGTRVDYILSSSNCSYKFVPGSYLVLSSKGTSDHHIVRADVMKVNSNNEGNNVTRKTKQERKQKVIRITHETPSKGIWKTHHGEIY* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3010 486 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 195 - -
Amo12g3010 486 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 204 480 - -
Amo12g3010 486 MobiDBLite consensus disorder prediction 86 139 - -
Amo12g3010 486 Pfam Endonuclease/Exonuclease/phosphatase family 203 434 IPR005135 GO:0003824
Amo12g3010 486 MobiDBLite consensus disorder prediction 92 109 - -
Amo12g3010 486 Gene3D Endonuclease/exonuclease/phosphatase 181 443 IPR036691 -
Amo12g3010 486 MobiDBLite consensus disorder prediction 41 63 - -
Amo12g3010 486 MobiDBLite consensus disorder prediction 110 128 - -
Amo12g3010 486 ProSitePatterns AP endonucleases family 1 signature 1. 215 224 IPR020847 GO:0003677|GO:0004519|GO:0006281
Amo12g3010 486 SUPERFAMILY DNase I-like 199 441 IPR036691 -
Amo12g3010 486 MobiDBLite consensus disorder prediction 30 66 - -
Amo12g3010 486 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 1 195 - -
Amo12g3010 486 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 204 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3010 Amo-Chr12 117722798 117726998 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3010 - - gsj:114390420 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3010 12 117722798 117726998 Amo12g3010 12 117722798 117726998 ECH
Amo16g0040 16 713429 717531 Amo12g3010 12 117722798 117726998 PCT
Amo12g3010 12 117722798 117726998 Amo16g0040 16 713429 717531 PCT