Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0027 ATGGCGCCCAGTCGCAAGAAGGGCGCCAGGAAGGCGGCGGCGGCTGCCGCCGCACGTCGGCAGTGGAAGGTCGGAGATCTCGTGCTTGCTAAGGTTAAGGGCTTCCCTGCCTGGCCCGCCACGGTAAGTGAGCCGGAGAAGTGGGGTTATTCCTCTGATGGGAAGAAAGTACTTGTTTACTTCTTTGGAACCCAACAAATAGCATTCTGCAATCCTGCTGATGTTGAAGCCTTTACTGAAGAGAAGAAACAGTCTCTTGCCAAACGACAGGGAAGGGGTGCTGATTTTGTGCGTGCAGTAAAGGAGATTATTGCCAGTTATGAAAAGTTAAAGCGAGACATCCAAGTTCAGAAAACTTGCTCCAATGATCAAGTTACTAATGTAGATGTCTCAAAGCCAGCTGACTCGTATGCTAATGTAAAGGTTCAAAGAGATGCTCCTTTGACACATGATTCACAAAATAAATCTTCAAATTTGACTGACAGACAAGAGTTAGTTTGTGCAGCTGAGAATGGTCCAGTAGTTGCAATTAGGGGTGAATCCTGTAATAATGAGGTATCATTGGAAGAACCTACTGATGATGCTGTTGCAACTGCAACTGGGAACTCACCTTTGCCAGTAACTTCCCCATCTCCAGGAAGATGCAAAGACTTGCATCTGGAAAGCCATGTACTACAAAGAAATGAGCCTGTTCGAAGATCTAGAAGCTCATCACGAGTCCACAACATTGTTGTGCCTTGTGATGCTGGAGGTAATGCTGGTGAAGTAACTCATATTGTGCCTATAACGAGGAACAAACGGATTAAAAAATCACCTGATCTCTCTGGGTGTGATGATGCTGATTCTTCAGCATATGCCTCCGATGTCAGCATGGAGGACAATGGTTCTGAAAATATTGCTGTTGATTCTGATTCCTTTAGCCCAAATGAGGGAAGTACACTAGATTCAGATTTTAAACTTGGACAGTCTGAGAATAGTGAGTGGCCTGAATTTGAAGTTGAGTTGAAGAAAGGGCTTGATCTAGAAATTAAGGCTGTATTCAATAAGAAGAAAAGAAAACCAAATAGGAAGAGGGCAAATAATGATTCTGCCACGCCATCCATCAGGAAAGAGGAGCCTGAATCTCAAAATGCCAATCACAGTTTGCAGAATATGTGTGGAAATTCAATTGAGAAATGCTTAAATCAAGACGGAGATGAACACTTGCCCCTATCAAAACGAGCCAGAGTTAGAATGGGCAAATCATCCAGTGAGGCAGAGCTCAATAGCACTGTGCAAGCTCAAGAGAAAAGCTATAAGGAAGACATTGTTAACTCACCAAAGCAGATAATCACATCCTCAAATTGTGAAAATGGTAGCCTGGCTGGTGAGGATCCGGTAGCATTGAATGGAACAGTGGTTCTCGTTTCTTCTTCAAATTTGTTAGAGCCACATTTTGAAAGTGGATCTCAGATTTGTAAAACAAAAAAAGAGAAAATGTTTGGCTGCACAATGGATGTTGAAGCTGCTTTACCTCCATCTAAGCGCCTCCATCGTGCTTTAGAAGCTATGTCTGCTAATGCTGCTGTAGAAGATCAAGCTTGCAACGAGCCATTGTCATCCTTATTGACATCGAGTGGAACTTCCACAAAGAGATGCCCTTGCATGACCACAAATTGCAGTAAAGGAGGTACTGATTTAGAAACGCAAGGCTTGGAATCGTGTGCCATTGGTTGTTCTCACATCAGTGTATCTAGTATCACCACCTGTTCAAATGCAATGATTTCAACAGAGAATAAGTCATCTTCTGAAGTGGATAAGCAGTTGAGCAAGTATCAATGCCATGAAGCTTGCAAAGATGTTGTCCTAGATGGTGTGGATCAAGTTGGTGAAAATCTTGGTGATTCTGTGGTCGATCAGGGTGCTAAAACAGATTCACAAATTCAGTTACATGGAAACATGTCTCCCAATCTTGATGTGAAGTGTTGTGAAGTTAGAAGCAATCAAGATTCTCCAGGTCCATCATTGCCACCAAAAGATGAAGACAATATGAAAACTGTGAATCATTCAAATCCATCTGATACATTAGAACTTAATGGAATAAGTGTTGATCCTGTGGCAGGTCCCGATGAAAGTGGTAAAGTGATACCTCAAAGTAGCATTAATGTGGGTGAGAACAAGGTTGTTTGTGAGGATACACAATGCTCAAAGCAAGCCATTGATGAAGGCAGCAGAATTAAAAACATGCATGAGGCTGTGAGAGGGGTAGAAATCAAGGGACAAGAGGAGTATATGAATTTGACCTCGATATCCAATGGTTGTTTGGGTGAAAATGGTACTTTGTGCATTCAGTCAAGCCCGTCCTTGACTGGTGGTGGAGGCTGCGTTCCTCAAGGATCACCTCCAAATACATCAGTTTGCAATGTTTCTACATCGGACAGTAGTAATATTCTACAAAATGGAAGTTGTAGCCCTGACGTACACCAGAAGAACACTTCATCTGGTCCCATTGATGGATGGAAAGATGGGTCTGTAGCAAATCAACAATCAAGATTGACAGGCAAGTCAACTGATGCAGGGAATGCTGCTTTGTTGTACTTTGAAGCAATGCTTGGAACATTGACAAGGACAAAGGAAAGTATTGGGCGGGCAACCCGAATAGCTATGGACTGTGCAAAGTTTGGCATTGCTGCTAAGGTGATGGAAATTCTTGTCCGAAGTCTGGAAACCGAGTCAAGCCTGCATCGGAAGGTGGACCTATTTTTTCTTGTTGATTCTATTGCTCAAAGTTCTCGTGGTTTGAAAGGTGATGGTGGAGCATATCCATCCGCTATGCAAGCTGTCCTCTCACGCCTATTGTCTGCTGCTGCTCCTCCTGGACATACTTCGCAAGAGAATCGCAGGCAGTGTCTTAAGGTTTTAAGGCTGTGGTTGGAGAGAAGAATCCTTCCAGAATCCATTATTCGTCGTCATATCCGGGAACTGGACACCTATCATAGTTCAGCAGGTGTTTATTCACGACGTACGTTACGGACAGAGAGGCCTTTAGATGACCCTGTTAGAGAAATGGAGGGTATGCTTGTTGACGAATATGGAAGCAACTCAAGTTTTCAGCTTCCTGGATTTTGCATGCCTCAAATGCTTAAAGATGAAGATGAAGAAGGGAGTGATTCTGATGGAGGGAACTTTGAGGCTGTCACTCCCGAGCATGATTCTGAAGTACATGAAGTGCCAGAAATTGCTCATGCAATTGAAAAACACAGACGTGTGTTGGAAGACGTTGATGGTGAGCTTGAAATGGAAGATGTGGCTCCCTCTTTTGATGTTGAATCAAATTCAAATTGCAATGTGGAGGGAGGAGATGGGGATGCCTCACAGTTGGAAAAGAATGTCCAACCATCCTTTGTTCCTCCTCTTCCACAGGAGGTTCCTCTTTCTTCGCCACCTCTACCACCATCCTCTTCACCTCCACCACCACCACCTTCTATGCTACCTCCACCACCACCACCACCGCCACCTTCTCTGCTACCTCCTCCTCCTCCTCCACCACCACCACCACCACCTTCTCTGCTTCCTCCCCCACCGCCTCCGCCTCCACCTCCACCTCCTCCACCTCCACCTCCACCTCCACCTCTTACTCCTACATTGCACTTGATGTCAGCTAGTACCACTGGTCCGTATCATGCTGCAGTTGATGCAAAAAATTTTGTAGATTCACAGATTGTGAGAGACAACATGCACCACTCTATGGCTGAACCCATGACTGCACCCAGAAGTAGCCAACCTATCAATGATGCAGTGTGCTATCAAGACCCAGAACAAAGAGGCATGCATATGACAGTACCGGAGCCTTCATGTTCTTTCAAGACATCCATGGCACAGCCACAACACAGTTTCCGGTATTCTGATGGTGCTACCCTGCAACACAATGGCTATCCATTACGACCACCTCAACCTGTGCCATCTGATCAGTTTTCTTTCGTTCACGGGGAACAATTGAAACCTCCTCGGGATGGTCCACCACCACCACCACCACCTTTCCACTCCAATAGGCATCACTTTGTGCAGAACATGCAAAGAGAGAACTTCTCCAGCAATCACGATAGATCAAAACCACCTCCATATGATTATCAAGAGAGATGGAATCCTCCCATGCCTTATTCTGGTCCTCAGTATCATGACAATGGTATGCATGTACCTTATGGTTGCCACCCGTGTGAATCTACTAGTTTACCAGGTCAGGGATGGAGGTTTCCTTCCCAGTCAATGAATCACTGGGATTCCATGCCTTACAGACCACCCTATGAAGATGCAGTTCCAGTAGCTAACCGAGGCCCAAGCTATTGGCGACCGAGATGA 4338 0.4502 MAPSRKKGARKAAAAAAARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSSDGKKVLVYFFGTQQIAFCNPADVEAFTEEKKQSLAKRQGRGADFVRAVKEIIASYEKLKRDIQVQKTCSNDQVTNVDVSKPADSYANVKVQRDAPLTHDSQNKSSNLTDRQELVCAAENGPVVAIRGESCNNEVSLEEPTDDAVATATGNSPLPVTSPSPGRCKDLHLESHVLQRNEPVRRSRSSSRVHNIVVPCDAGGNAGEVTHIVPITRNKRIKKSPDLSGCDDADSSAYASDVSMEDNGSENIAVDSDSFSPNEGSTLDSDFKLGQSENSEWPEFEVELKKGLDLEIKAVFNKKKRKPNRKRANNDSATPSIRKEEPESQNANHSLQNMCGNSIEKCLNQDGDEHLPLSKRARVRMGKSSSEAELNSTVQAQEKSYKEDIVNSPKQIITSSNCENGSLAGEDPVALNGTVVLVSSSNLLEPHFESGSQICKTKKEKMFGCTMDVEAALPPSKRLHRALEAMSANAAVEDQACNEPLSSLLTSSGTSTKRCPCMTTNCSKGGTDLETQGLESCAIGCSHISVSSITTCSNAMISTENKSSSEVDKQLSKYQCHEACKDVVLDGVDQVGENLGDSVVDQGAKTDSQIQLHGNMSPNLDVKCCEVRSNQDSPGPSLPPKDEDNMKTVNHSNPSDTLELNGISVDPVAGPDESGKVIPQSSINVGENKVVCEDTQCSKQAIDEGSRIKNMHEAVRGVEIKGQEEYMNLTSISNGCLGENGTLCIQSSPSLTGGGGCVPQGSPPNTSVCNVSTSDSSNILQNGSCSPDVHQKNTSSGPIDGWKDGSVANQQSRLTGKSTDAGNAALLYFEAMLGTLTRTKESIGRATRIAMDCAKFGIAAKVMEILVRSLETESSLHRKVDLFFLVDSIAQSSRGLKGDGGAYPSAMQAVLSRLLSAAAPPGHTSQENRRQCLKVLRLWLERRILPESIIRRHIRELDTYHSSAGVYSRRTLRTERPLDDPVREMEGMLVDEYGSNSSFQLPGFCMPQMLKDEDEEGSDSDGGNFEAVTPEHDSEVHEVPEIAHAIEKHRRVLEDVDGELEMEDVAPSFDVESNSNCNVEGGDGDASQLEKNVQPSFVPPLPQEVPLSSPPLPPSSSPPPPPPSMLPPPPPPPPPSLLPPPPPPPPPPPPSLLPPPPPPPPPPPPPPPPPPPPLTPTLHLMSASTTGPYHAAVDAKNFVDSQIVRDNMHHSMAEPMTAPRSSQPINDAVCYQDPEQRGMHMTVPEPSCSFKTSMAQPQHSFRYSDGATLQHNGYPLRPPQPVPSDQFSFVHGEQLKPPRDGPPPPPPPFHSNRHHFVQNMQRENFSSNHDRSKPPPYDYQERWNPPMPYSGPQYHDNGMHVPYGCHPCESTSLPGQGWRFPSQSMNHWDSMPYRPPYEDAVPVANRGPSYWRPR* 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0027 1445 PRINTS Proline rich extensin signature 1175 1191 - -
Amo16g0027 1445 PRINTS Proline rich extensin signature 1142 1154 - -
Amo16g0027 1445 PRINTS Proline rich extensin signature 1154 1175 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 416 433 - -
Amo16g0027 1445 Gene3D - 3 107 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1328 1342 - -
Amo16g0027 1445 CDD HDGF_related 21 103 IPR035496 -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1296 1344 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 269 321 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 287 321 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 412 433 - -
Amo16g0027 1445 Pfam CID domain 860 982 IPR006569 -
Amo16g0027 1445 Gene3D - 858 995 IPR008942 -
Amo16g0027 1445 SUPERFAMILY Tudor/PWWP/MBT 19 119 - -
Amo16g0027 1445 SMART 558neu5 859 989 IPR006569 -
Amo16g0027 1445 ProSiteProfiles CID domain profile. 852 992 IPR006569 -
Amo16g0027 1445 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1174 1445 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1041 1066 - -
Amo16g0027 1445 PANTHER PWWP DOMAIN PROTEIN 1 1175 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1424 1445 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1130 1208 - -
Amo16g0027 1445 SMART PWWP_4 22 79 IPR000313 -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 351 379 - -
Amo16g0027 1445 Pfam PWWP domain 25 107 IPR000313 -
Amo16g0027 1445 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1175 - -
Amo16g0027 1445 ProSiteProfiles PWWP domain profile. 24 81 IPR000313 -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 659 691 - -
Amo16g0027 1445 MobiDBLite consensus disorder prediction 1098 1217 - -
Amo16g0027 1445 PANTHER PWWP DOMAIN PROTEIN 1174 1445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0027 Amo-Chr16 484244 493227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0027 - - ahf:112805343 2204.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0027 16 484244 493227 Amo06g0462 06 6420431 6429414 hybridization