Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0014 GTCGTTCATATACAGCGATTGTCGTTTTGGAGCCCAAAACCACACTCGCCTCCTTTCAGCTTTCGTCTTCCTTCGGTCTCTGCCACTGCCACCATCATCACCATGAAGCTCGTTAGGTTTCTCATGAAGTTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGTACTATTGTCCACGGCACTATCACAGGTGTTGATATCAGTATGAATACACATTTGAAAACCGTTAAACTAACCCTGAAAGGGAAAAACCCAGTGACTCTGGATCATCTTAGCGTGAGAGGCAACAACATTCGTTATTACATCCTTCCAGACAGCTTGAATCTCGAGACTTTACTAGTTGAAGAGACTCCAAGAGTCAAGCCTAAGAAGCCAACTGCTGGGAAGCCGTTGGGGAGAGGAAGGGGAAGAGGACGCGGGCGTGGACGTGGTCGTGGCCGTTAA 447 0.4787 VVHIQRLSFWSPKPHSPPFSFRLPSVSATATIITMKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0014 148 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 35 144 IPR027141 GO:0006396
Amo16g0014 148 MobiDBLite consensus disorder prediction 119 148 - -
Amo16g0014 148 SUPERFAMILY Sm-like ribonucleoproteins 38 147 IPR010920 -
Amo16g0014 148 Pfam LSM domain 39 103 IPR001163 -
Amo16g0014 148 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 35 144 - -
Amo16g0014 148 CDD Sm_D1 36 127 IPR034102 GO:0000387
Amo16g0014 148 SMART Sm3 39 104 IPR001163 -
Amo16g0014 148 MobiDBLite consensus disorder prediction 127 148 - -
Amo16g0014 148 Gene3D - 29 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0014 Amo-Chr16 344778 346974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0014 K11087 - aof:109843520 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0014 16 344778 346974 Amo16g0014 16 344778 346974 ECH
Amo16g0014 16 344778 346974 Amo06g0488 06 6818382 6820607 hybridization