Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0488 CAGCGATTGTCGTTTTGGAGCCCAAAACCACACTCGCCTCCTTTCAGCTTTCGTCTTCCTTCGGTCTCTGCCACTGCCACCACCATCACCATGAAGCTCGTTAGGTTTCTCATGAAGTTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGTACTATTGTCCACGGCACTATCACAGGTGTTGATATCAGTATGAATACACATTTGAAAACCGTTAAACTAACCCTGAAAGGGAAAAACCCAGTGACTCTGGATCATCTTAGCGTGAGAGGCAACAACATTCGTTATTACATCCTTCCAGACAGCTTGAATCTCGAGACTTTACTAGTTGAAGAGACTCCAAGAGTCAAGCCTAAGAAGCCAACTGCTGGGAAGCCGTTGGGGAGAGGAAGGGGAAGAGGACGCGGGCGTGGACGTGGTCGTGGCCGTTAA 435 0.4851 QRLSFWSPKPHSPPFSFRLPSVSATATTITMKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0488 144 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 31 140 IPR027141 GO:0006396
Amo06g0488 144 SMART Sm3 35 100 IPR001163 -
Amo06g0488 144 Pfam LSM domain 35 99 IPR001163 -
Amo06g0488 144 Gene3D - 25 115 - -
Amo06g0488 144 MobiDBLite consensus disorder prediction 115 144 - -
Amo06g0488 144 SUPERFAMILY Sm-like ribonucleoproteins 34 143 IPR010920 -
Amo06g0488 144 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 31 140 - -
Amo06g0488 144 CDD Sm_D1 32 123 IPR034102 GO:0000387
Amo06g0488 144 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0488 Amo-Chr6 6818382 6820607 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0488 K11087 - aof:109843520 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0014 16 344778 346974 Amo06g0488 06 6818382 6820607 hybridization