Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0578 ATGACTAATACCGTGTTGGTGCAGGGCTGTTGCTTCATTCATAACATCATCAAAATGAAGAAATTGTATGGAGGAGTCTTAATTGCTTCATTGTTTATGCTGTTTATGCTTATGATCCTGCGATATGGGGTCATGAAAAATCCTATCAGTGAAGCTTATCCAACAATACCTGTCTCCCTTAATGTTAATGGTACTAATCCTCTAGAATGGATAAAACCTATGGCTCCTCCTGCTGTTCGCAATCCAGCTGTTACATCTCAAGTTATTTCTGCTGATATTTTAGTATCTAGCCTCTTTTTGGGGAGCAACTTTTCGAAAGAAGAGCAGCAAGCTCTGCAGACACGGAACCACTTGAAACACTTACTTGATCATGCTCAGGGTTTACCTAATGCAGTAGAAGCTATCAAGGAAGCTGCGGGTGTATGGAATAGTCTTATTTCTTCAGTTGAAGAGCAAAGACAAGGTTATGCAAATGATAGTTCTAGAACAAAAGAGAAACAGTGTCCCCATTTTCTTAACAATATGAGTTCCCCTGAACTCGGTAACGGTAGTTATGAACTGCAAGTACCCTGTGGACTGACACAGGGTTCTTCCATTACTGTAATTGGCATTCCAAATGGTCTTCTTGGCAATTTTCGGATTGACTTGACTGGAGAACCACTTCCTGGGGAGCCTGACCCCCCTATAATTTTGCACTATAATGTTAGGCTTCATGGTGACAAAATCACTGAAGATCCTGTAATTGTCCAAAACTCCTGGACAGCAGCTCATGATTGGGGAGGAGAGGAGCGTTGCCCATCACCCACTCCTGAAAAGGTTAAGAAAGTTGATGACTTGGAAGAGTGCAATAAGATTGTAGGGAAGAACATAAGCCAACATTACATGGCTGGCATGCATTCCTACACTTCAAGGCAATCTTTAGCAACAGAAGAACACTCAAAACAGAGTAAATACTTTCCTTTTAAGCAAGGTTTACCTTTTGTTGCAACTCTTCGAGTGGGATCAGAGGGAATTCAGATGACAGTTGATGGAAAGCACATAACCTCATTCACTTTCCGTGAAACTTTGGAGCCATGGGTTGTCAATGAGATACGAATTTCAGGGGACATCAAGTTAATTTCTGTTCTTGCCAGTGGTCTGCCCACATCAGAGGATTCAGAGCATATTGTCGATCTAGAATCACTAAAAGCAAGTCCTGTATCAGCACAGACCCCATTAGATCTCTTCATTGGTGTCTTCTCTACTGCGAACAATTTCAAGCGTCGGATGGCTGTTAGAAGAACCTGGATGCAATACAATGCAGTTCGAACAAACAAATCAGCCGTGCGCTTCTTTGTTGGTTTGCACAAGAGCCAAATAGTAAATGAAGAACTATGGAAAGAAGCACAAACCTATGGAGACATACAGCTGATGCCATTTGTTGACTACTACAGTCTTATAACCTGGAAGTCTTTAGCTATTTGCATTTTTGGGACGGAGGTTGTTTCAGCAAAGTTTGTCATGAAGACAGACGACGATGCATTTGTTCGAGTAGATGAAGTGCTGGCATCTTTGAAAAGGATCAATGTGGCTCATGGTTTACTATATGGACTTATTAATTCAGATTCTAGACCACACCGAAGTACTGATAGCAAATGGTACATCAGCCCAGAGGAGTGGAGTGAAGCAACTTATCCTTCTTGGGCACACGGTCCTGGCTACGTTATCTCAAATGATATAGCAAGGACAGTGTACAAGAAATACAGAGATGGTCATTTAAAGATGTTTAAACTAGAAGACGTTGCAATGGGAATATGGATTGCAGACATGAAGAAGGAAGGTCTAGAAGTTCGGTATGAGAATGAAGGCAGAGTCTATAATGAAGGTTGCAAGGAGGGTTATGTGGTTGCTCATTACCAAGGTCCTAGGGAGCTGCTATGTTTGTGGCAGAAACTTCAGGAAGGAAAAGGTGCCAAATGTTGTGGTGATAGATGA 1974 0.4179 MTNTVLVQGCCFIHNIIKMKKLYGGVLIASLFMLFMLMILRYGVMKNPISEAYPTIPVSLNVNGTNPLEWIKPMAPPAVRNPAVTSQVISADILVSSLFLGSNFSKEEQQALQTRNHLKHLLDHAQGLPNAVEAIKEAAGVWNSLISSVEEQRQGYANDSSRTKEKQCPHFLNNMSSPELGNGSYELQVPCGLTQGSSITVIGIPNGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLHGDKITEDPVIVQNSWTAAHDWGGEERCPSPTPEKVKKVDDLEECNKIVGKNISQHYMAGMHSYTSRQSLATEEHSKQSKYFPFKQGLPFVATLRVGSEGIQMTVDGKHITSFTFRETLEPWVVNEIRISGDIKLISVLASGLPTSEDSEHIVDLESLKASPVSAQTPLDLFIGVFSTANNFKRRMAVRRTWMQYNAVRTNKSAVRFFVGLHKSQIVNEELWKEAQTYGDIQLMPFVDYYSLITWKSLAICIFGTEVVSAKFVMKTDDDAFVRVDEVLASLKRINVAHGLLYGLINSDSRPHRSTDSKWYISPEEWSEATYPSWAHGPGYVISNDIARTVYKKYRDGHLKMFKLEDVAMGIWIADMKKEGLEVRYENEGRVYNEGCKEGYVVAHYQGPRELLCLWQKLQEGKGAKCCGDR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0578 657 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 85 647 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo15g0578 657 Gene3D - 398 621 - -
Amo15g0578 657 Gene3D - 179 376 - -
Amo15g0578 657 Pfam Galactoside-binding lectin 185 376 IPR001079 GO:0030246
Amo15g0578 657 SMART Gal_bind_lectin_2 189 377 IPR001079 GO:0030246
Amo15g0578 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 185 378 IPR013320 -
Amo15g0578 657 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 185 378 IPR001079 GO:0030246
Amo15g0578 657 PANTHER - 85 647 - -
Amo15g0578 657 CDD GLECT 185 375 IPR001079 GO:0030246
Amo15g0578 657 Pfam Galactosyltransferase 420 604 IPR002659 GO:0006486|GO:0016020|GO:0016758
Amo15g0578 657 SMART galectin_3 183 378 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0578 Amo-Chr15 36817843 36823600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo15g0578 19 654 Glycosyltransferase AT1G26810 63.240 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0578 K14413 - gmx:100782548 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0578 15 36817843 36823600 Amo15g0578 15 36817843 36823600 ECH
Amo01g3362 01 106032431 106034273 Amo15g0578 15 36817843 36823600 PCT