Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0014 ATGAAGAGACATCTTCTGGCACTGTTATTCTTCTTTCTCCTTCTTGACTCATCTCTTTCAATATCGCTGGGACCTGTCGCTAAAATCTTTAGGAATCCCGCCATCAAGAGATTATACAAGCATCCGCTTGCCAAAAAGGCATTCCATACCGGATTCGACTATTTGAAGAACCAGAGCACCCCTCCACCACCGCCAGGTGCGCCGGAGGAGAAAATCCAAGGCCTCCATTTGGTGAAACAGTATCTCAACGATTACGGTTACATGCAAGACTCCGACAATTACACAGATCTAATGGACCAGGACACCGTTTCTGCCATCAAAACCTATCAAACCTTCTTCAATCTCACCGTCACCGGATACCTCGATGACGAGACTCTTCAGCAGCTTTCGCTGTTCCGATGTGCTGTCCCGGACGTTAATTTCAACTACTCTCTCTCCCCTACCAACAACGTGTCGTGGCCTAAAGGGAAAGACTGGTTCTCTAACCGCACCAATCTCACCTACGGCTTTCTCCCGCAGAGCGACATCCCAGACAACTTCACCGCGGTGTTTAAAGACTCATTCAAGCGGTGGTCAGACGCTATAACGCCGGTACTAAACCTAACACTCACAGAGACAAGGTACGACGATGCAGACATTAAGATAGGATTCTACAAATTTAATAACATGACGGTGGGCAATGAGGTGGTAGGGGTAAGCGTTATAGAACTTGTTTCGGGTAACGAAGATGTTACTGTTGGGGACATGCTTTTGGATGCTACAAAGTACTGGGCACTTCCCAATGACACTCTTAAACTTAACAGCTCAACGCTAGAGGATGGTATAATTGACTTGGGTGCTGTGGCGATGCACCAGATAGGGCATCTTCTTGGACTTTCACACTCCTCTCACAATGAATCGGTTATGTATCCTTATATTTTGCCTCAAAACCAGAGGAAGGTGCAGCTCTCAAACGATGATAAACAACAAATCAAACAAGTTTATTCCACCCATGCAAGTGGAGTTGGGACCAGTAATTGGGAATTCATTACCGCTCTCTCACTTGGATTTGCATGCATGTTCCTGTTGTACTAG 1074 0.4618 MKRHLLALLFFFLLLDSSLSISLGPVAKIFRNPAIKRLYKHPLAKKAFHTGFDYLKNQSTPPPPPGAPEEKIQGLHLVKQYLNDYGYMQDSDNYTDLMDQDTVSAIKTYQTFFNLTVTGYLDDETLQQLSLFRCAVPDVNFNYSLSPTNNVSWPKGKDWFSNRTNLTYGFLPQSDIPDNFTAVFKDSFKRWSDAITPVLNLTLTETRYDDADIKIGFYKFNNMTVGNEVVGVSVIELVSGNEDVTVGDMLLDATKYWALPNDTLKLNSSTLEDGIIDLGAVAMHQIGHLLGLSHSSHNESVMYPYILPQNQRKVQLSNDDKQQIKQVYSTHASGVGTSNWEFITALSLGFACMFLLY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0014 357 Pfam Matrixin 162 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo15g0014 357 Pfam Putative peptidoglycan binding domain 74 129 IPR002477 -
Amo15g0014 357 Gene3D Collagenase (Catalytic Domain) 66 333 IPR024079 GO:0008237
Amo15g0014 357 PANTHER MATRIX METALLOPROTEINASE 69 332 - -
Amo15g0014 357 PANTHER MATRIXIN PROTEIN 69 332 - -
Amo15g0014 357 SMART col_5 155 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Amo15g0014 357 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo15g0014 357 PRINTS Matrixin signature 184 199 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo15g0014 357 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo15g0014 357 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo15g0014 357 SUPERFAMILY PGBD-like 67 139 IPR036365 -
Amo15g0014 357 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 159 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0014 Amo-Chr15 364226 365828 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0014 - - ahf:112801038 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo15g0014 15 364226 365828 Amo15g0014 15 364226 365828 ECH
Amo05g1759 05 35463653 35465116 Amo15g0014 15 364226 365828 hybridization