Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1759 GGGTCTTTTTCTCCATGGGATAACARCAAATGCAAAACACAATRCCAATTGTCAAACGGCGACGTTTCCAAGAGCGACCAATCTTCCGGGTACTTACCTTACCTATTTGCCCAACCGCGGGAATCAATAGAACTTTTCAAAGCCGCATCAAAAATCAAACTAAAAACAAAAGCAACAATAATTAGACGAAGACTTCAAATCTCGGCTCGTATGTTCCCAGATCCATCATCTATTCCGGGGTGGCTCTCCAGCCACGCGCCGCCTGGCGTTTGGGACTCGTACCGGAACTTCACCGGCTGCCAGCGTGGCAAAACATACGAAGGCCTATCCAAAATCAAAGACTACTTCCACCACTTCGGGTACATCCCCAACGCACCGCCGTCCAACTTCACTGACGACTTCGACGAGGCGCTGGAGGCTGCCGTCAAAATCTACCAGAAGAATTTCAACCTCAACGTCACCGGCGAGCTCGACGACGCAACTCTTAGCCAGATCGTCCGGCCACGGTGCGGCATCGCCGACATCATCAACGGCACGACGGCAATGAACTCGGGCAAGTCCGACACCAACACGACTGCCACAAGCAGCACGAAGCTGAAATTCCACACCGTCGGACACTACACGTTCTTCGACGGGAAGCCGCGGTGGCCGGAGGGAACGACGGAACTGACCTACGCGTTCGATCCAGGCAACAACCTCGAAGACGTTGTTAAGAACGTTTTCGCCAGAGCATTTTCGCGTTGGTCGGAGGTAACGACAATAAACTTCAATGAAACGACGTCGTTTTCAGACGCCGACGTGAAGATAGGGTTTTACACGGGGAACCACGGAGACGGAGAACCGTTCGACGGCGTTCTTGGAACTTTGGCGCACGCGTTCTCTCCAACGGACGGGAGGTTCCACCTTGACGGTGCGGAGGACTGGGTTGCCTCCGGCGATGTGACGACGGCGTCGCTGTCGACGGCGGTGGATCTTGAATCTGTTGCGGTGCATGAAATAGGGCACTTGTTAGGGTTGGGTCACACTTCTGTGAAAGAAGCTATAATGTACCCTACGATAACTGCGAAAACGAGGAAGGTGGAGCTTAAGGATGATGACATTGCTGGTGTTCAGAACCTTTATGGTTCAAATCCTCACTATACTGGTACGACTACCATTTCTTCGCGTGAGACCAGCAATGGCGGAATGCACGTGGGGTCCATGTGGGGTTTGGTGATTCTATTGGTCGTTGGGGTTGCACATTTGGTTTTGTAA 1254 0.5231 GSFSPWDNXKCKTQXQLSNGDVSKSDQSSGYLPYLFAQPRESIELFKAASKIKLKTKATIIRRRLQISARMFPDPSSIPGWLSSHAPPGVWDSYRNFTGCQRGKTYEGLSKIKDYFHHFGYIPNAPPSNFTDDFDEALEAAVKIYQKNFNLNVTGELDDATLSQIVRPRCGIADIINGTTAMNSGKSDTNTTATSSTKLKFHTVGHYTFFDGKPRWPEGTTELTYAFDPGNNLEDVVKNVFARAFSRWSEVTTINFNETTSFSDADVKIGFYTGNHGDGEPFDGVLGTLAHAFSPTDGRFHLDGAEDWVASGDVTTASLSTAVDLESVAVHEIGHLLGLGHTSVKEAIMYPTITAKTRKVELKDDDIAGVQNLYGSNPHYTGTTTISSRETSNGGMHVGSMWGLVILLVVGVAHLVL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1759 417 Pfam Putative peptidoglycan binding domain 108 164 IPR002477 -
Amo05g1759 417 SMART col_5 212 376 IPR006026 GO:0006508|GO:0008237|GO:0008270
Amo05g1759 417 PANTHER MATRIX METALLOPROTEINASE 68 409 - -
Amo05g1759 417 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 209 379 - -
Amo05g1759 417 PRINTS Matrixin signature 362 375 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo05g1759 417 PRINTS Matrixin signature 328 353 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo05g1759 417 PRINTS Matrixin signature 165 178 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo05g1759 417 PRINTS Matrixin signature 265 293 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo05g1759 417 PRINTS Matrixin signature 241 256 IPR021190 GO:0004222|GO:0006508|GO:0008270
Amo05g1759 417 SUPERFAMILY PGBD-like 112 175 IPR036365 -
Amo05g1759 417 Gene3D Collagenase (Catalytic Domain) 97 381 IPR024079 GO:0008237
Amo05g1759 417 CDD ZnMc_MMP 215 375 IPR033739 GO:0008237|GO:0008270
Amo05g1759 417 Pfam Matrixin 220 375 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Amo05g1759 417 PANTHER MATRIX METALLOPROTEINASE 68 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1759 Amo-Chr5 35463653 35465116 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1759 - - gmx:100781471 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1759 05 35463653 35465116 Amo15g0014 15 364226 365828 hybridization