Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1583 ATGGTGCTTCCTCACTTTCTTCCCTTTCTGCTCTTCTTCTTCCTACTTCTTGTTGCTGATGGCAGGTTCGTGGTGGAGAAGAGCAGCATCACGGTGCTGTCTCCGCACACCATGAAGGCCAAGCACGACGGCGCCATAGGAAACTTCGGTGTTCCTAACTACGGAGGATTCATAGTGGGATCCGTACACTACCCTGACAAAGACTCTCATGGTTGTAAGCCTTTTGAAGGTGATAAGCCTTTCAAGATTCACTCTTATCGCCCCACTATTCTTCTCCTTGATCGTGGAGAGTGTTACTTTGCGTTGAAGGTATGGCATGCTCAAATAGCTGGAGCTGCAGCAGTGTTAGTAACTGACAGCATTGATGAGACCCTAATAACCATGGATTCTCCAGAAGAGAGRAACGATGCAGATGGATACATAGAGAAGATTCAYATCCCCTCGGCGCTGATCGAGAAATCRTTCGGCGACGAGCTGAAGCAAGCACTGAGCAAGAAAGACGAAGTSATGCTTAGAATTGACTGGAGAGAATCAGTGCCTCACCCAGACAACAGAGTGGAGTATGAGCTATGGACTAACAGCAACGACGAGTGTGGCGCTCGCTGCGAAGAGCAGATGAATTTCGTCAAGAATTTCAAAGGACATGCTCAGATTCTTGAGAGGGGAGGCTACACATTGTTCACTCCTCACTACATAACCTGGTTTTGTCCCAAGCCGTTTGTAGAGAGCAGACAGTGCAAATCTCAGTGTATAAATCATGGAAGGTATTGTGCGCCGGATCCSGAGAAGGATTTTGGAGAAGGATATGAAGGGAAGGATGTGGTGTATGAAAACTTGAGGCAGTTGTGCGTTCATAGAGTTGCCAATGAGAGTAACCGTTCTTGGGTTTGGTGGGATTATGTAACAGATTTCCATATCAGGTGTTCTATGAAGGAGAAAAAATACACCAAACAATGTGCTGAAGATGTCATGAAATCATTAGATTTGCCTATAGAGAAAATTAAAAAGTGCATGGGTGACCCCGAAGCTGATGTGGAGAATGAGGTGCTAAAGAATGAGCAACTACGCCAGATAGGGCATGGATCTCGTGGCGATGTCACCATCTTGCCAACTTTGGTTATAAACGATGTCCAGTATCGAGGAAAATTGGAGAGATCTGCTGTTCTYAAAGCTGTATGTGCTGGATTCGAGGAGACTACTGAACCTCCAGTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGATGTTGGAAGGATGAGAGGGCRAACATAAGTGCTTGCAGAGATACTTTTAGGGGAAGAGTTTGTGAGTGCCCTGTTGTGAAAGGTGTCCAGTATAAGGGTGATGGTTATACATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCAATAAACAATGGAGGTTGTTGGTCAGAAACTAAAAACAAATTAACTTTCTCAGCTTGCTCAGAATTTATAGTAAATGGTTGTCGTTGCCCAGTTGGATTCCATGGGGATGGATACAAATGTGATGATGTTGATGAATGCAAGGACCGAAGCGCTTGTCAGTGTGATGGCTGCACCTGCAAGAATACATGGGGTAGCTATGATTGCAAATGCAAAGGAAATCTTCTTTACATGAGGGAACAAGATGTTTGTATTGAAAGAAGTGGATCAAGATTTGGGCGGTTCCTCGCATTTTTGGTGATAGCAGTTGTTGCAGCTGCCYGTTTAGCCGGTTATGTATTCTACAAATACAGACTCAGGGCTTACATGGACTCGGAAATCATGGCTATCATGTCCCAGTACATGCCACTAGACCAGCAAAATAATGTAGCTCATGCCGAAACTGAACCTTTACGGTCACAAGGCACTGTATAA 1878 0.4452 MVLPHFLPFLLFFFLLLVADGRFVVEKSSITVLSPHTMKAKHDGAIGNFGVPNYGGFIVGSVHYPDKDSHGCKPFEGDKPFKIHSYRPTILLLDRGECYFALKVWHAQIAGAAAVLVTDSIDETLITMDSPEERNDADGYIEKIHIPSALIEKSFGDELKQALSKKDEVMLRIDWRESVPHPDNRVEYELWTNSNDECGARCEEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESRQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKKYTKQCAEDVMKSLDLPIEKIKKCMGDPEADVENEVLKNEQLRQIGHGSRGDVTILPTLVINDVQYRGKLERSAVLKAVCAGFEETTEPPVCLSGDIETNECLERNGGCWKDERANISACRDTFRGRVCECPVVKGVQYKGDGYTSCEAFGPARCSINNGGCWSETKNKLTFSACSEFIVNGCRCPVGFHGDGYKCDDVDECKDRSACQCDGCTCKNTWGSYDCKCKGNLLYMREQDVCIERSGSRFGRFLAFLVIAVVAAAXLAGYVFYKYRLRAYMDSEIMAIMSQYMPLDQQNNVAHAETEPLRSQGTV* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1583 625 Gene3D Laminin 467 553 - -
Amo14g1583 625 SMART egfca_6 511 553 IPR001881 GO:0005509
Amo14g1583 625 Gene3D - 20 182 - -
Amo14g1583 625 Pfam PA domain 60 159 IPR003137 -
Amo14g1583 625 Gene3D Laminin 405 461 - -
Amo14g1583 625 CDD EGF_CA 511 540 - -
Amo14g1583 625 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 8 601 - -
Amo14g1583 625 SUPERFAMILY PA domain 88 179 IPR046450 -
Amo14g1583 625 ProSitePatterns Calcium-binding EGF-like domain signature. 511 537 IPR018097 GO:0005509
Amo14g1583 625 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 8 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1583 Amo-Chr14 28779007 28783986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1583 9 622 Miscellaneous Gene Families AT1G30900 71.151 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1583 - - aip:107639095 1276.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1583 14 28779007 28783986 Amo04g0450 04 8938456 8943502 hybridization