Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0450 TGTTACTTTGCGTTGAAGGTATGGCATGCTCAAATAGCTGGAGCTGCAGCAGTGTTAGTAACTGACAGCATTGATGAGACCCTAATAACCATGGATTCTCCAGAAGAGAGTAACGATGCAGATGGATACATAGAGAAGATTCAGATCCCCTCGGCGCTGATCGAGAAATCTTTCGGCGACGAGCTGAAGCAAGCACTGAGCAAGAAAGACGAAGTCATGCTTAGAATTGACTGGAGAGAATCAGTGCCTCACCCAGACAACAGAGTGGAGTATGAGCTATGGACTAACAGCAACGACGAGTGTGGCGCTCGCTGCGAAGAGCAGATGAATTTCGTCAAGAATTTCAAAGGACATGCTCAGATTCTTGAGAGGGGAGGCTACACATTGTTCACTCCTCACTACATAACCTGGTTTTGTCCCAAGCCGTTTGTAGAGAGCAGACAGTGCAAATCTCAGTGTATAAATCATGGAAGGTATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAAGGATATGAAGGGAAGGATGTGGTGTATGAAAACTTGAGGCAGTTGTGCGTTCATAGAGTTGCCAATGAGAGTAACCGTTCTTGGGTTTGGTGGGATTATGTAACAGATTTCCATATCAGGTGTTCTATGAAGGAGAAAAAATACACCAAACAATGTGCTGAAGATGTCATGAAATCATTAGATTTGCCTATAGAGAAAATTAAAAAGTGCATGGGTGACCCCGAAGCTGATGTGGAGAATGAGGTGCTAAAGAATGAGCAACTACGCCAGATAGGGCATGGATCTCGTGGCGATGTCACCATCTTGCCAACTTTGGTTATAAACGATGTCCAGTATCGAGGAAAATTGGAGAGATCTGCTGTTCTAAAAGCTGTATGTGCTGGATTCGAGGAGACTACTGAACCTCCAGTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGATGTTGGAAGGATGAGAGGGCCAACATAAGTGCTTGCAGAGATACTTTTAGGGGAAGAGTTTGTGAGTGCCCTGTTGTGAAAGGTGTCCAGTATAAGGGTGATGGTTATACATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCAATAAACAATGGAGGTTGTTGGTCAGAAACTAAAAACAAATTAACTTTCTCAGCTTGCTCAGAATTTATAGTAAATGGTTGTCGTTGCCCAGTTGGATTCCATGGGGATGGATACAAATGTGATGATGTTGATGAATGCAAGGACCGAAGCGCTTGTCAGTGTGATGGCTGCACCTGCAAGAATACATGGGGTAGCTATGATTGCAAATGCAAAGGAAATCTTCTTTACATGAGGGAACAAGATGTTTGTATTGAAAGAAGTGGATCAAGATTTGGGCGGTTCCTCGCATTTTTGGTGATAGCAGTTGTTGCAGCTGCCAGTTTAGCCGGTTATGTATTCTACAAATACAGACTCAGGGCTTACATGGACTCGGAAATCATGGCTATCATGTCCCAGTACATGCCACTAGACCAGCAAAATAATGTAGCTCATGCCGAAACTGAACCTTTACGGTCACAAGGCACTGTATAA 1587 0.4386 CYFALKVWHAQIAGAAAVLVTDSIDETLITMDSPEESNDADGYIEKIQIPSALIEKSFGDELKQALSKKDEVMLRIDWRESVPHPDNRVEYELWTNSNDECGARCEEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPKPFVESRQCKSQCINHGRYCAPDPEKDFGEGYEGKDVVYENLRQLCVHRVANESNRSWVWWDYVTDFHIRCSMKEKKYTKQCAEDVMKSLDLPIEKIKKCMGDPEADVENEVLKNEQLRQIGHGSRGDVTILPTLVINDVQYRGKLERSAVLKAVCAGFEETTEPPVCLSGDIETNECLERNGGCWKDERANISACRDTFRGRVCECPVVKGVQYKGDGYTSCEAFGPARCSINNGGCWSETKNKLTFSACSEFIVNGCRCPVGFHGDGYKCDDVDECKDRSACQCDGCTCKNTWGSYDCKCKGNLLYMREQDVCIERSGSRFGRFLAFLVIAVVAAASLAGYVFYKYRLRAYMDSEIMAIMSQYMPLDQQNNVAHAETEPLRSQGTV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0450 528 ProSitePatterns Calcium-binding EGF-like domain signature. 414 440 IPR018097 GO:0005509
Amo04g0450 528 SMART egfca_6 414 456 IPR001881 GO:0005509
Amo04g0450 528 Gene3D Laminin 308 364 - -
Amo04g0450 528 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN-CONTAINING PROTEIN-RELATED 1 504 - -
Amo04g0450 528 Gene3D Laminin 370 456 - -
Amo04g0450 528 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 504 - -
Amo04g0450 528 CDD EGF_CA 414 443 - -
Amo04g0450 528 Pfam PA domain 1 62 IPR003137 -
Amo04g0450 528 Gene3D - 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0450 Amo-Chr4 8938456 8943502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0450 1 525 Miscellaneous Gene Families AT1G30900 74.286 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0450 - - aip:107639095 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1583 14 28779007 28783986 Amo04g0450 04 8938456 8943502 hybridization